Bacteroides fragilis strain CM13

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis strain CM13 is a Gram-negative, rod-shaped anaerobe that thrives in host-associated environments, primarily within the gastrointestinal tracts of various organisms including Homo sapiens, Gallus gallus, Metazoa, Equidae, and Serpentes. As a chemoorganotroph, it derives energy from organic compounds, which is typical for many gut microbiota. This strain is characterized by its single-cell arrangement and the presence of flagella, though it exhibits no mobility. It has a mesophilic growth range, with an optimal temperature for growth at 37°C, aligning with the body temperature of its primary hosts. Bacteroides fragilis CM13 has a single replicon and is surrounded by a double membrane, which is a common feature of Gram-negative bacteria. In terms of health effects, Bacteroides fragilis strain CM13 has been associated with several serious conditions including bacteremia, abscesses, and various pathologies such as Alzheimer's disease (AD), diarrhea, colitis, and colorectal cancer (CRC). These associations indicate a significant pathogenic potential, particularly in the context of intraabdominal abscesses and localized tissue infections. The ecological role of Bacteroides fragilis CM13 highlights its dual nature as both a free-living organism and a potential pathogen. While it contributes to the microbiota balance in the gut, its pathogenic potential emphasizes the importance of maintaining gut health to prevent adverse health effects, particularly in immunocompromised individuals. Understanding such species is crucial for developing strategies to manage gut microbiota and mitigate disease risks.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strainstrain CM13

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis strain CM13
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Metazoa
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genome Summary

Bacteroides fragilis strain CM13 contig0086, whole genome shotgun

Gene Summary

Adenine Count

1515001 bp

Thymine Count

1445887 bp

Guanine Count

1091691 bp

Cytosine Count

1153952 bp

Genome Length

5208842 bp

Protein-coding Genes

4222 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate--trna ligaseCQW35_00085Not AvailablePositive96688 - 9844566232.7
gtra-like proteinCQW35_00086Not AvailablePositive98446 - 9882914896.4
n-carbamoyl-d-amino acid hydrolaseCQW35_00087Not AvailableNegative98910 - 9979433085.3
putative agmatine deiminaseCQW35_00088Not AvailableNegative99806 - 10091241425.4
putative protein containing a ferredoxin domain (duf2148)CQW35_00089Not AvailableNegative101002 - 10152919002.0
putative abc transporter atp-binding proteinCQW35_00090Not AvailablePositive101624 - 10224422759.9
putative protein family (upf0014)CQW35_00091Not AvailablePositive102248 - 10304229545.7
hypothetical proteinCQW35_00092Not AvailablePositive103050 - 10332210397.7
glyoxalase/bleomycin resistance protein/dioxygenase superfamily proteinCQW35_00093Not AvailablePositive103414 - 10379714541.1
protein of unknown function (duf4891)CQW35_00094Not AvailableNegative103790 - 10420316115.6

Displaying genes 81 – 90 of 4222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Ad pathologiesCausesPMC10482867
DiarrheaCausesPMC13367044
ColitisCausesPMC13367044
Tumor formationCausesPMC13367044
Anaerobic bacteremiaCausesPMC5704556
Intraabdominal abscessesCausesPMC5704556
Colorectal cancerCausesPMC11704243
CrcCausesPMC11704243
BacteremiaCausesPMC8554563
SepticemiaCausesPMC8554563

Displaying health effects 1 – 10 of 19 in total