Collimonas sp. PA-H2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. PA-H2 is a bacterial strain characterized by a single replicon, indicating its genetic structure is organized in a single circular chromosome. The strain is cataloged under the accession number PDBX00000000.1, which provides a reference point for researchers interested in studying its genomic features and biological functions. The unique trait of Collimonas sp. PA-H2 lies in its ecological niche. Members of the Collimonas genus are known for their saprophytic lifestyle, where they play an essential role in decomposing organic matter in soil environments. This capability enables them to contribute to nutrient cycling, enhancing soil fertility and supporting plant growth. The precise metabolic pathways and ecological interactions of Collimonas sp. PA-H2 may provide insights into its role in soil ecosystems, particularly in how it interacts with other microorganisms and contributes to the degradation of organic substrates. Understanding these interactions is vital for appreciating the broader implications of this strain in ecological dynamics and soil health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. PA-H2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. PA-H2 Ga0114272_12, whole genome shotgun sequence.

Gene Summary

Adenine Count

1222070 bp

Thymine Count

1231824 bp

Guanine Count

1746065 bp

Cytosine Count

1745750 bp

Genome Length

5945709 bp

Protein-coding Genes

5176 genes

Non-Coding Genes

215 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative negative regulator of rcsb-dependent stress responseBCF11_5057Not AvailableNegative5494241 - 549489123477.7
histidyl-trna synthetaseBCF11_5058Not AvailableNegative5494912 - 549630951475.7
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseBCF11_5059Not AvailableNegative5496385 - 549764144701.0
cytoskeleton protein rodzBCF11_5060Not AvailableNegative5497661 - 549866234117.4
type iv pilus assembly protein pilfBCF11_5061Not AvailableNegative5498655 - 549949730887.2
23s rrna m(2)a-2503 methyltransferaseBCF11_5062Not AvailableNegative5499494 - 550066943278.3
nucleoside diphosphate kinaseBCF11_5063Not AvailableNegative5500763 - 550117314837.9
modulator of ftsh proteaseBCF11_5064Not AvailablePositive5501467 - 550216225200.3
23s rrna (uracil1939-c5)-methyltransferaseBCF11_5065Not AvailableNegative5502461 - 550381049434.0
rna polymerase rpos-like sigma 38 subunitBCF11_5066Not AvailableNegative5503930 - 550496138680.7

Displaying genes 4981 – 4990 of 5391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.