Collimonas sp. PA-H2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. PA-H2 is a bacterial strain characterized by a single replicon, indicating its genetic structure is organized in a single circular chromosome. The strain is cataloged under the accession number PDBX00000000.1, which provides a reference point for researchers interested in studying its genomic features and biological functions. The unique trait of Collimonas sp. PA-H2 lies in its ecological niche. Members of the Collimonas genus are known for their saprophytic lifestyle, where they play an essential role in decomposing organic matter in soil environments. This capability enables them to contribute to nutrient cycling, enhancing soil fertility and supporting plant growth. The precise metabolic pathways and ecological interactions of Collimonas sp. PA-H2 may provide insights into its role in soil ecosystems, particularly in how it interacts with other microorganisms and contributes to the degradation of organic substrates. Understanding these interactions is vital for appreciating the broader implications of this strain in ecological dynamics and soil health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. PA-H2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. PA-H2 Ga0114272_12, whole genome shotgun sequence.

Gene Summary

Adenine Count

1222070 bp

Thymine Count

1231824 bp

Guanine Count

1746065 bp

Cytosine Count

1745750 bp

Genome Length

5945709 bp

Protein-coding Genes

5176 genes

Non-Coding Genes

215 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding gntr family transcriptional regulatorBCF11_2355Not AvailableNegative2558902 - 255963026761.4
simple sugar transport system atp-binding proteinBCF11_2356Not AvailablePositive2559848 - 256148258680.5
simple sugar transport system permease proteinBCF11_2357Not AvailablePositive2561475 - 256256338623.9
simple sugar transport system permease proteinBCF11_2358Not AvailablePositive2562565 - 256348532204.4
simple sugar transport system substrate-binding proteinBCF11_2359Not AvailablePositive2563541 - 256468040173.9
sterol desaturase/sphingolipid hydroxylase (fatty acid hydroxylase superfamily)BCF11_2360Not AvailablePositive2564878 - 256608345107.2
hypothetical proteinBCF11_2361Not AvailablePositive2566356 - 256672713576.4
uncharacterized protein duf3297BCF11_2362Not AvailableNegative2567013 - 25672619479.33
hypothetical proteinBCF11_2363Not AvailablePositive2567443 - 256774511144.0
multidrug efflux system membrane fusion proteinBCF11_2364Not AvailablePositive2567998 - 256917041954.5

Displaying genes 2461 – 2470 of 5391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.