Collimonas sp. PA-H2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. PA-H2 is a bacterial strain characterized by a single replicon, indicating its genetic structure is organized in a single circular chromosome. The strain is cataloged under the accession number PDBX00000000.1, which provides a reference point for researchers interested in studying its genomic features and biological functions. The unique trait of Collimonas sp. PA-H2 lies in its ecological niche. Members of the Collimonas genus are known for their saprophytic lifestyle, where they play an essential role in decomposing organic matter in soil environments. This capability enables them to contribute to nutrient cycling, enhancing soil fertility and supporting plant growth. The precise metabolic pathways and ecological interactions of Collimonas sp. PA-H2 may provide insights into its role in soil ecosystems, particularly in how it interacts with other microorganisms and contributes to the degradation of organic substrates. Understanding these interactions is vital for appreciating the broader implications of this strain in ecological dynamics and soil health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. PA-H2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. PA-H2 Ga0114272_12, whole genome shotgun sequence.

Gene Summary

Adenine Count

1222070 bp

Thymine Count

1231824 bp

Guanine Count

1746065 bp

Cytosine Count

1745750 bp

Genome Length

5945709 bp

Protein-coding Genes

5176 genes

Non-Coding Genes

215 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like enzymeBCF11_1729Not AvailablePositive1897747 - 189896445020.4
4,5-dopa dioxygenase extradiolBCF11_1730Not AvailableNegative1898987 - 189978428507.1
putative oxidoreductaseBCF11_1731Not AvailableNegative1899805 - 190020913759.1
dna-binding transcriptional lysr family regulatorBCF11_1732Not AvailablePositive1900354 - 190126833751.6
phasin family proteinBCF11_1733Not AvailableNegative1901318 - 190187219300.8
d-alanyl-d-alanine carboxypeptidase-like proteinBCF11_1734Not AvailableNegative1901981 - 190276328424.1
nte family proteinBCF11_1735Not AvailableNegative1902780 - 190396443698.6
iron(iii) transport system substrate-binding proteinBCF11_1736Not AvailablePositive1904161 - 190519536999.9
iron(iii) transport system atp-binding proteinBCF11_1737Not AvailableNegative1905380 - 190645338559.7
iron(iii) transport system permease proteinBCF11_1738Not AvailablePositive1906579 - 190820759404.5

Displaying genes 1841 – 1850 of 5391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.