Collimonas sp. PA-H2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. PA-H2 is a bacterial strain characterized by a single replicon, indicating its genetic structure is organized in a single circular chromosome. The strain is cataloged under the accession number PDBX00000000.1, which provides a reference point for researchers interested in studying its genomic features and biological functions. The unique trait of Collimonas sp. PA-H2 lies in its ecological niche. Members of the Collimonas genus are known for their saprophytic lifestyle, where they play an essential role in decomposing organic matter in soil environments. This capability enables them to contribute to nutrient cycling, enhancing soil fertility and supporting plant growth. The precise metabolic pathways and ecological interactions of Collimonas sp. PA-H2 may provide insights into its role in soil ecosystems, particularly in how it interacts with other microorganisms and contributes to the degradation of organic substrates. Understanding these interactions is vital for appreciating the broader implications of this strain in ecological dynamics and soil health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. PA-H2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. PA-H2 Ga0114272_12, whole genome shotgun sequence.

Gene Summary

Adenine Count

1222070 bp

Thymine Count

1231824 bp

Guanine Count

1746065 bp

Cytosine Count

1745750 bp

Genome Length

5945709 bp

Protein-coding Genes

5176 genes

Non-Coding Genes

215 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate/aspartate transport system atp-binding proteinBCF11_1609Not AvailableNegative1764610 - 176533526552.5
glutamate/aspartate transport system permease proteinBCF11_1610Not AvailableNegative1765408 - 176610326026.7
glutamate/aspartate transport system permease proteinBCF11_1611Not AvailableNegative1766106 - 176685827358.8
glutamate/aspartate transport system substrate-binding proteinBCF11_1612Not AvailableNegative1767023 - 176797033604.7
glutamate/aspartate transport system substrate-binding proteinBCF11_1613Not AvailableNegative1768146 - 176908134426.5
hypothetical proteinBCF11_1614Not AvailableNegative1769118 - 17692916705.15
glutamate dehydrogenase (nad(p)+)BCF11_1615Not AvailableNegative1769334 - 177062046388.6
dna-binding transcriptional lysr family regulatorBCF11_1616Not AvailableNegative1770828 - 177180836631.3
atp-binding cassette subfamily b proteinBCF11_1617Not AvailableNegative1771983 - 177387269626.2
acyl-coa thioesterase yciaBCF11_1618Not AvailablePositive1773951 - 177435814842.0

Displaying genes 1721 – 1730 of 5391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.