Ochrobactrum vermis strain MYb71 unitig_3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Brucellaceae

Genus

Ochrobactrum

Description

Ochrobactrum vermis strain MYb71, with the accession number PCOC00000000.1, is characterized by having a single replicon. This trait indicates that it has a streamlined genomic structure, which may influence its adaptability and ecological interactions. As a member of the genus Ochrobactrum, this strain is likely to exhibit diverse metabolic capabilities, allowing it to thrive in various environments, although specific metabolic pathways and ecological roles are not detailed in the provided information. The genus is known for its ability to degrade complex organic compounds, suggesting that O. vermis strain MYb71 may play a role in bioremediation or nutrient cycling in its natural habitat. The single replicon configuration may contribute to the organism's stability and efficiency in replicating its genetic material, potentially enhancing its survival in fluctuating environmental conditions. This trait may also reflect a reduced genetic redundancy, which could lead to a more efficient use of resources. In conclusion, Ochrobactrum vermis strain MYb71's single replicon characteristic may facilitate its adaptability and ecological function, although further investigation is needed to fully understand its specific roles in microbial communities and its potential applications in biotechnological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBrucellaceae
GenusOchrobactrum
SpeciesOchrobactrum vermis
Strainstrain MYb71 unitig_3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ochrobactrum vermis strain MYb71 unitig_3, whole genome shotgun

Gene Summary

Adenine Count

1192350 bp

Thymine Count

1190138 bp

Guanine Count

1504050 bp

Cytosine Count

1513232 bp

Genome Length

5399770 bp

Protein-coding Genes

4926 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protocatechuate 3,4-dioxygenase subunit alphaCQZ93_19340Not AvailableNegative3935665 - 393628222606.9
protocatechuate 3,4-dioxygenase subunit betaCQZ93_19345Not AvailableNegative3936284 - 393702427857.5
4-carboxymuconolactone decarboxylaseCQZ93_19350Not AvailableNegative3937021 - 393742814816.4
3-oxoadipate enol-lactonaseCQZ93_19355Not AvailableNegative3937431 - 393823429423.1
pca operon transcription factor pcaqCQZ93_19360Not AvailablePositive3938328 - 393924233207.6
4-hydroxybenzoate 3-monooxygenaseCQZ93_19365Not AvailableNegative3939451 - 394062043614.8
arac family transcriptional regulatorCQZ93_19370Not AvailablePositive3940728 - 394164234822.1
iclr family transcriptional regulatorCQZ93_19375Not AvailableNegative3941668 - 394242327904.2
3-oxoadipate coa-transferaseCQZ93_19380Not AvailablePositive3942640 - 394334724832.0
3-oxoacid coa-transferaseCQZ93_19385Not AvailablePositive3943344 - 394403324722.8

Displaying genes 3781 – 3790 of 5078 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.