Ochrobactrum vermis strain MYb71 unitig_3

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Brucellaceae

Genus

Ochrobactrum

Description

Ochrobactrum vermis strain MYb71, with the accession number PCOC00000000.1, is characterized by having a single replicon. This trait indicates that it has a streamlined genomic structure, which may influence its adaptability and ecological interactions. As a member of the genus Ochrobactrum, this strain is likely to exhibit diverse metabolic capabilities, allowing it to thrive in various environments, although specific metabolic pathways and ecological roles are not detailed in the provided information. The genus is known for its ability to degrade complex organic compounds, suggesting that O. vermis strain MYb71 may play a role in bioremediation or nutrient cycling in its natural habitat. The single replicon configuration may contribute to the organism's stability and efficiency in replicating its genetic material, potentially enhancing its survival in fluctuating environmental conditions. This trait may also reflect a reduced genetic redundancy, which could lead to a more efficient use of resources. In conclusion, Ochrobactrum vermis strain MYb71's single replicon characteristic may facilitate its adaptability and ecological function, although further investigation is needed to fully understand its specific roles in microbial communities and its potential applications in biotechnological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBrucellaceae
GenusOchrobactrum
SpeciesOchrobactrum vermis
Strainstrain MYb71 unitig_3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ochrobactrum vermis strain MYb71 unitig_3, whole genome shotgun

Gene Summary

Adenine Count

1192350 bp

Thymine Count

1190138 bp

Guanine Count

1504050 bp

Cytosine Count

1513232 bp

Genome Length

5399770 bp

Protein-coding Genes

4926 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramate--l-alanine ligaseCQZ93_08895Not AvailableNegative1793188 - 179460650988.0
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseCQZ93_08900Not AvailableNegative1794603 - 179574240229.6
putative lipid ii flippase ftswCQZ93_08905Not AvailableNegative1795750 - 179691042096.9
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseCQZ93_08910Not AvailableNegative1796910 - 179831348951.3
phospho-n-acetylmuramoyl-pentapeptide- transferaseCQZ93_08915Not AvailableNegative1798326 - 179940838629.4
udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligaseCQZ93_08920Not AvailableNegative1799435 - 180086551095.0
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseCQZ93_08925Not AvailableNegative1800862 - 180233451651.8
cell division proteinCQZ93_08930Not AvailableNegative1802389 - 180420365979.8
hypothetical proteinCQZ93_08935Not AvailableNegative1804206 - 180460714679.0
16s rrna (cytosine(1402)-n(4))-methyltransferaseCQZ93_08940Not AvailableNegative1804612 - 180565237378.8

Displaying genes 1831 – 1840 of 5078 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.