Variovorax sp.

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. is a bacterial species identified from an Antarctic specimen, specifically located in the Barton Peninsula on King George Island. This organism exhibits a rod-shaped morphology, which is characteristic of many members within the Variovorax genus. Notably, Variovorax sp. has been characterized by having a single replicon, which indicates a streamlined genetic structure that may facilitate efficient replication and adaptation to its environment. The genomic data for this species can be accessed under the accession number PBYB00000000.1, providing a basis for further genetic and ecological studies. The ecological significance of Variovorax sp. in its Antarctic habitat may be tied to its potential roles in biogeochemical cycles, particularly in nutrient cycling within extreme environments. The adaptability and resilience of this bacterial species to cold, harsh conditions underscore the importance of microbial life in polar ecosystems, contributing to the understanding of microbial diversity and function in extreme habitats. Further research could elucidate the specific ecological roles of Variovorax sp. and its interactions within the Antarctic microbial community.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatAntarctic specimen; Antarctica; Barton Peninsula; King George Island
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Variovorax sp. isolate NP4 MHASMcontig_837532, whole genome

Gene Summary

Adenine Count

1423611 bp

Thymine Count

1430467 bp

Guanine Count

3192501 bp

Cytosine Count

3198003 bp

Genome Length

9279585 bp

Protein-coding Genes

8352 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class ii aldolaseCMO32_32835Not AvailableNegative6993544 - 699434428913.6
twin-arginine translocation pathway signal proteinCMO32_32840Not AvailableNegative6994363 - 699535234245.3
dihydroxy-acid dehydrataseCMO32_32845Not AvailableNegative6995387 - 699712360680.9
polyketide cyclaseCMO32_32850Not AvailableNegative6997161 - 699762516963.3
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolaseCMO32_32855Not AvailableNegative6997645 - 699847528923.8
2-oxo-hepta-3-ene-1,7-dioic acid hydrataseCMO32_32860Not AvailableNegative6998493 - 699929629221.9
5-carboxymethyl-2-hydroxymuconate isomeraseCMO32_32865Not AvailableNegative6999314 - 699972114715.4
extradiol ring-cleavage dioxygenaseCMO32_32870Not AvailableNegative6999735 - 700056230210.1
aromatic ring-opening dioxygenase subunit ligaCMO32_32875Not AvailableNegative7000559 - 700089412254.7
laci family transcriptional regulatorCMO32_32880Not AvailableNegative7000897 - 700187133895.2

Displaying genes 6351 – 6360 of 8403 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.