Variovorax sp.

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. is a bacterial species identified from an Antarctic specimen, specifically located in the Barton Peninsula on King George Island. This organism exhibits a rod-shaped morphology, which is characteristic of many members within the Variovorax genus. Notably, Variovorax sp. has been characterized by having a single replicon, which indicates a streamlined genetic structure that may facilitate efficient replication and adaptation to its environment. The genomic data for this species can be accessed under the accession number PBYB00000000.1, providing a basis for further genetic and ecological studies. The ecological significance of Variovorax sp. in its Antarctic habitat may be tied to its potential roles in biogeochemical cycles, particularly in nutrient cycling within extreme environments. The adaptability and resilience of this bacterial species to cold, harsh conditions underscore the importance of microbial life in polar ecosystems, contributing to the understanding of microbial diversity and function in extreme habitats. Further research could elucidate the specific ecological roles of Variovorax sp. and its interactions within the Antarctic microbial community.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatAntarctic specimen; Antarctica; Barton Peninsula; King George Island
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Variovorax sp. isolate NP4 MHASMcontig_837532, whole genome

Gene Summary

Adenine Count

1423611 bp

Thymine Count

1430467 bp

Guanine Count

3192501 bp

Cytosine Count

3198003 bp

Genome Length

9279585 bp

Protein-coding Genes

8352 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase small subunitCMO32_31860Not AvailablePositive6790845 - 679152224268.2
hypothetical proteinCMO32_31865Not AvailablePositive6791519 - 679254135448.2
iclr family transcriptional regulatorCMO32_31870Not AvailableNegative6792542 - 679331526612.0
tripartite tricarboxylate transporter substrate binding proteinCMO32_31875Not AvailablePositive6793425 - 679440833664.9
4-oxalomesaconate hydrataseCMO32_31880Not AvailablePositive6794425 - 679549539297.7
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylaseCMO32_31885Not AvailablePositive6795488 - 679617123780.9
putative dna modification/repair radical sam proteinCMO32_31890Not AvailablePositive6796285 - 679753846145.6
uracil-dna glycosylaseCMO32_31895Not AvailablePositive6797550 - 679899253442.1
hybrid sensor histidine kinase/response regulatorCMO32_31900Not AvailableNegative6798999 - 680082565845.6
dihydroorotaseCMO32_31905Not AvailablePositive6801026 - 680205736137.3

Displaying genes 6161 – 6170 of 8403 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.