Variovorax sp.

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. is a bacterial species identified from an Antarctic specimen, specifically located in the Barton Peninsula on King George Island. This organism exhibits a rod-shaped morphology, which is characteristic of many members within the Variovorax genus. Notably, Variovorax sp. has been characterized by having a single replicon, which indicates a streamlined genetic structure that may facilitate efficient replication and adaptation to its environment. The genomic data for this species can be accessed under the accession number PBYB00000000.1, providing a basis for further genetic and ecological studies. The ecological significance of Variovorax sp. in its Antarctic habitat may be tied to its potential roles in biogeochemical cycles, particularly in nutrient cycling within extreme environments. The adaptability and resilience of this bacterial species to cold, harsh conditions underscore the importance of microbial life in polar ecosystems, contributing to the understanding of microbial diversity and function in extreme habitats. Further research could elucidate the specific ecological roles of Variovorax sp. and its interactions within the Antarctic microbial community.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatAntarctic specimen; Antarctica; Barton Peninsula; King George Island
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Variovorax sp. isolate NP4 MHASMcontig_837532, whole genome

Gene Summary

Adenine Count

1423611 bp

Thymine Count

1430467 bp

Guanine Count

3192501 bp

Cytosine Count

3198003 bp

Genome Length

9279585 bp

Protein-coding Genes

8352 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
septal ring lytic transglycosylase rlpa family lipoproteinCMO32_07955Not AvailablePositive1683984 - 168461921052.1
23s rrna (adenine(2030)-n(6))-methyltransferase rlmjCMO32_07960Not AvailableNegative1684636 - 168558632726.5
serine proteaseCMO32_07970Not AvailablePositive1686341 - 168756142416.4
50s ribosomal protein l13CMO32_07975Not AvailablePositive1687739 - 168816715622.1
30s ribosomal protein s9CMO32_07980Not AvailablePositive1688180 - 168857214283.3
iron-sulfur cluster insertion protein erpaCMO32_07985Not AvailablePositive1688776 - 168914112923.1
mfs transporterCMO32_07990Not AvailablePositive1689230 - 169067250401.3
anhydro-n-acetylmuramic acid kinaseCMO32_07995Not AvailableNegative1690674 - 169180438704.3
peptidase m23CMO32_08000Not AvailableNegative1691867 - 169321647455.8
tyrosine--trna ligaseCMO32_08005Not AvailablePositive1693375 - 169460744940.8

Displaying genes 1541 – 1550 of 8403 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.