Variovorax sp.

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. is a bacterial species identified from an Antarctic specimen, specifically located in the Barton Peninsula on King George Island. This organism exhibits a rod-shaped morphology, which is characteristic of many members within the Variovorax genus. Notably, Variovorax sp. has been characterized by having a single replicon, which indicates a streamlined genetic structure that may facilitate efficient replication and adaptation to its environment. The genomic data for this species can be accessed under the accession number PBYB00000000.1, providing a basis for further genetic and ecological studies. The ecological significance of Variovorax sp. in its Antarctic habitat may be tied to its potential roles in biogeochemical cycles, particularly in nutrient cycling within extreme environments. The adaptability and resilience of this bacterial species to cold, harsh conditions underscore the importance of microbial life in polar ecosystems, contributing to the understanding of microbial diversity and function in extreme habitats. Further research could elucidate the specific ecological roles of Variovorax sp. and its interactions within the Antarctic microbial community.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatAntarctic specimen; Antarctica; Barton Peninsula; King George Island
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Variovorax sp. isolate NP4 MHASMcontig_837532, whole genome

Gene Summary

Adenine Count

1423611 bp

Thymine Count

1430467 bp

Guanine Count

3192501 bp

Cytosine Count

3198003 bp

Genome Length

9279585 bp

Protein-coding Genes

8352 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
urea abc transporter atp-binding protein urtdCMO32_05645Not AvailableNegative1201964 - 120284231486.1
urea abc transporter permease subunit urtcCMO32_05650Not AvailableNegative1202839 - 120406543765.4
urea abc transporter permease subunit urtbCMO32_05655Not AvailableNegative1204062 - 120560953943.4
hypothetical proteinCMO32_05665Not AvailablePositive1206543 - 120712719957.7
type vi secretion system baseplate subunit tsseCMO32_05670Not AvailablePositive1207127 - 120768420177.0
type vi secretion system baseplate subunit tssfCMO32_05675Not AvailablePositive1207684 - 120956469144.4
type vi secretion system baseplate subunit tssgCMO32_05680Not AvailablePositive1209561 - 121074542471.5
type vi secretion system atpase tsshCMO32_05685Not AvailablePositive1210742 - 121347196910.1
type vi secretion system tip protein vgrgCMO32_05690Not AvailablePositive1213487 - 121588087852.0
hypothetical proteinCMO32_05695Not AvailablePositive1215880 - 121635616799.8

Displaying genes 1091 – 1100 of 8403 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.