Rubrivirga sp.

Kingdom

Pseudomonadati

Phylum

Rhodothermota

Class

Rhodothermia

Order

Rhodothermales

Family

Rubricoccaceae

Genus

Rubrivirga

Description

Rubrivirga sp. is a genus of bacteria characterized by the presence of a single replicon, indicating a simplified genomic structure. The specific strain associated with this genus is represented by the accession number PBTV00000000.1, which provides a reference for genomic studies and further classification within the microbial community. Rubrivirga sp. is notable for its ecological role, likely contributing to biogeochemical cycling in its native environment. While specific metabolic capabilities and habitat preferences are not provided, the simplicity of having a single replicon may suggest adaptations that allow for efficient replication and survival in a specific ecological niche. The genomic data associated with this organism could provide insights into its evolutionary strategies and interactions within microbial communities. The understanding of Rubrivirga sp. can help elucidate its function within ecosystems, particularly in environments where such bacteria might thrive. Its single replicon may also suggest evolutionary advantages in certain conditions, potentially allowing it to adapt quickly to environmental changes. Further research, focusing on its ecological interactions and metabolic processes, could enhance our understanding of its role in microbial diversity and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumRhodothermota
ClassRhodothermia
OrderRhodothermales
FamilyRubricoccaceae
GenusRubrivirga
SpeciesRubrivirga sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rubrivirga sp. isolate NP52 16110, whole genome shotgun

Gene Summary

Adenine Count

368720 bp

Thymine Count

373450 bp

Guanine Count

607658 bp

Cytosine Count

612370 bp

Genome Length

1965511 bp

Protein-coding Genes

1952 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
malate dehydrogenaseCMN22_00900Not AvailablePositive163026 - 16398230945.1
isocitrate dehydrogenase (nadp(+))CMN22_00905Not AvailablePositive163991 - 16520542992.2
acyl-coa thioesterase iiCMN22_00910Not AvailableNegative165202 - 16615535482.1
hypothetical proteinCMN22_00915Not AvailablePositive166176 - 16749547986.7
tryptophan--trna ligaseCMN22_00920Not AvailablePositive167500 - 16850436742.5
hypothetical proteinCMN22_00925Not AvailableNegative168532 - 16990547691.1
nad-dependent succinate-semialdehyde dehydrogenaseCMN22_00930Not AvailablePositive170017 - 17145950742.1
short-chain dehydrogenaseCMN22_00935Not AvailableNegative171476 - 17238432051.8
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)CMN22_00940Not AvailableNegative172282 - 17410265178.2
inosose dehydrataseCMN22_00945Not AvailablePositive174278 - 17516832304.2

Displaying genes 181 – 190 of 2004 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.