Herbaspirillum sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum sp. is a Gram-negative bacterium characterized by the presence of flagella, which facilitates its motility. This genus is known for its ability to colonize plant roots, suggesting a potential role in promoting plant growth or aiding in nutrient acquisition. Herbaspirillum species typically have a single replicon, indicating a streamlined genetic organization that may contribute to their adaptability in various environments. The genome of Herbaspirillum sp. is represented in the accession number PBPP00000000.1, which provides a reference for further studies on its genetic makeup and functional capabilities. The presence of flagella may enhance its ability to navigate through soil and rhizosphere environments, allowing it to establish beneficial associations with plants. Ecologically, the interactions between Herbaspirillum sp. and plants could enhance nutrient cycling in terrestrial ecosystems. By colonizing plant roots, these bacteria may play a role in nitrogen fixation or the uptake of essential nutrients, thus contributing to plant health and agricultural productivity. The presence of such bacteria is significant in maintaining soil quality and promoting sustainable agricultural practices. Overall, Herbaspirillum sp. exemplifies the intricate relationships between soil microorganisms and plant life, highlighting the importance of microbial communities in ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Herbaspirillum sp. isolate RS355 TaraRedSea_contig_256401,

Gene Summary

Adenine Count

1057484 bp

Thymine Count

1057212 bp

Guanine Count

1780830 bp

Cytosine Count

1777142 bp

Genome Length

5672672 bp

Protein-coding Genes

5023 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gluconolaconaseCME87_21515Not AvailablePositive4774654 - 477553532006.7
iclr family transcriptional regulatorCME87_21520Not AvailableNegative4775592 - 477644331645.1
fuconate dehydrataseCME87_21525Not AvailablePositive4776807 - 477808447621.2
short-chain dehydrogenaseCME87_21530Not AvailablePositive4778128 - 477890427853.2
l-fucose mutarotaseCME87_21535Not AvailablePositive4778912 - 477926513347.0
d-xylose abc transporter atp-binding proteinCME87_21540Not AvailablePositive4779468 - 478102456598.9
abc transporter permeaseCME87_21545Not AvailablePositive4781068 - 478210836300.4
bmp family abc transporter substrate-binding proteinCME87_21550Not AvailablePositive4782191 - 478257113295.2
dihydroxy-acid dehydrataseCME87_21555Not AvailablePositive4782578 - 478363637226.0
2-dehydro-3-deoxyglucarate aldolaseCME87_21560Not AvailablePositive4783710 - 478449527683.4

Displaying genes 4271 – 4280 of 5118 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.