Herbaspirillum sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum sp. is a Gram-negative bacterium characterized by the presence of flagella, which facilitates its motility. This genus is known for its ability to colonize plant roots, suggesting a potential role in promoting plant growth or aiding in nutrient acquisition. Herbaspirillum species typically have a single replicon, indicating a streamlined genetic organization that may contribute to their adaptability in various environments. The genome of Herbaspirillum sp. is represented in the accession number PBPP00000000.1, which provides a reference for further studies on its genetic makeup and functional capabilities. The presence of flagella may enhance its ability to navigate through soil and rhizosphere environments, allowing it to establish beneficial associations with plants. Ecologically, the interactions between Herbaspirillum sp. and plants could enhance nutrient cycling in terrestrial ecosystems. By colonizing plant roots, these bacteria may play a role in nitrogen fixation or the uptake of essential nutrients, thus contributing to plant health and agricultural productivity. The presence of such bacteria is significant in maintaining soil quality and promoting sustainable agricultural practices. Overall, Herbaspirillum sp. exemplifies the intricate relationships between soil microorganisms and plant life, highlighting the importance of microbial communities in ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Herbaspirillum sp. isolate RS355 TaraRedSea_contig_256401,

Gene Summary

Adenine Count

1057484 bp

Thymine Count

1057212 bp

Guanine Count

1780830 bp

Cytosine Count

1777142 bp

Genome Length

5672672 bp

Protein-coding Genes

5023 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-oxoadipate enol-lactonaseCME87_19670Not AvailableNegative4364298 - 436508328035.5
muconolactone delta-isomeraseCME87_19675Not AvailableNegative4365161 - 436544810756.1
lysr family transcriptional regulatorCME87_19680Not AvailableNegative4365675 - 436662835933.5
muconate cycloisomeraseCME87_19685Not AvailablePositive4366773 - 436796642096.0
catechol 1,2-dioxygenaseCME87_19690Not AvailablePositive4368017 - 436895233660.8
benzoate 1,2-dioxygenase large subunitCME87_19695Not AvailablePositive4369065 - 437043851940.9
benzoate 1,2-dioxygenase small subunitCME87_19700Not AvailablePositive4370435 - 437092919487.8
nadh oxidaseCME87_19705Not AvailablePositive4370951 - 437197636190.3
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseCME87_19710Not AvailablePositive4371973 - 437276127514.2
hypothetical proteinCME87_19715Not AvailablePositive4372796 - 437320614936.2

Displaying genes 3941 – 3950 of 5118 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.