Herbaspirillum sp.

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum sp. is a Gram-negative bacterium characterized by the presence of flagella, which facilitates its motility. This genus is known for its ability to colonize plant roots, suggesting a potential role in promoting plant growth or aiding in nutrient acquisition. Herbaspirillum species typically have a single replicon, indicating a streamlined genetic organization that may contribute to their adaptability in various environments. The genome of Herbaspirillum sp. is represented in the accession number PBPP00000000.1, which provides a reference for further studies on its genetic makeup and functional capabilities. The presence of flagella may enhance its ability to navigate through soil and rhizosphere environments, allowing it to establish beneficial associations with plants. Ecologically, the interactions between Herbaspirillum sp. and plants could enhance nutrient cycling in terrestrial ecosystems. By colonizing plant roots, these bacteria may play a role in nitrogen fixation or the uptake of essential nutrients, thus contributing to plant health and agricultural productivity. The presence of such bacteria is significant in maintaining soil quality and promoting sustainable agricultural practices. Overall, Herbaspirillum sp. exemplifies the intricate relationships between soil microorganisms and plant life, highlighting the importance of microbial communities in ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Herbaspirillum sp. isolate RS355 TaraRedSea_contig_256401,

Gene Summary

Adenine Count

1057484 bp

Thymine Count

1057212 bp

Guanine Count

1780830 bp

Cytosine Count

1777142 bp

Genome Length

5672672 bp

Protein-coding Genes

5023 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
galactose 1-dehydrogenaseCME87_15555Not AvailableNegative3423703 - 342462633808.3
aldo/keto reductaseCME87_15560Not AvailableNegative3424673 - 342566236072.1
lysr family transcriptional regulatorCME87_15565Not AvailablePositive3425775 - 342669233687.6
mfs transporterCME87_15570Not AvailableNegative3426712 - 342828055880.2
emra/emrk family multidrug efflux transporter periplasmic adaptor subunitCME87_15575Not AvailableNegative3428331 - 342957543751.8
marr family transcriptional regulatorCME87_15580Not AvailableNegative3429717 - 343121953218.1
tetr family transcriptional regulatorCME87_15585Not AvailablePositive3431482 - 343209922820.8
methylamine utilization proteinCME87_15590Not AvailablePositive3432307 - 343299624842.1
ggdef domain-containing proteinCME87_15595Not AvailablePositive3433042 - 343543286764.9
hypothetical proteinCME87_15600Not AvailablePositive3435491 - 343651636669.0

Displaying genes 3131 – 3140 of 5118 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.