Pedosphaera sp.

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Pedosphaerae

Order

Pedosphaerales

Family

Pedosphaeraceae

Genus

Pedosphaera

Description

Pedosphaera sp. is characterized by having two replicons, which is notable for its genomic structure. The organism is associated with two specific accessions: NZFL00000000.1 and NZPE00000000.1. These accessions provide genetic information that can facilitate further studies on the species. As a member of the microbial community, Pedosphaera sp. likely plays a role in ecological processes, potentially influencing soil health and nutrient cycling. The presence of multiple replicons may suggest a level of genomic complexity that could be advantageous for adaptation to various environmental conditions. Understanding the genomic features of Pedosphaera sp. may offer insights into its metabolic capabilities and ecological functions. This can contribute to our knowledge of microbial diversity and the roles these organisms play in their habitats, particularly in soil ecosystems. The dual replicon structure may allow for a more versatile response to environmental stressors, although specific traits related to its ecological interactions remain uncharacterized. Overall, the genomic characteristics of Pedosphaera sp. indicate its potential significance in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassPedosphaerae
OrderPedosphaerales
FamilyPedosphaeraceae
GenusPedosphaera
SpeciesPedosphaera sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pedosphaera sp. isolate MED719 142300, whole genome shotgun

Gene Summary

Adenine Count

1062694 bp

Thymine Count

1068303 bp

Guanine Count

975602 bp

Cytosine Count

974492 bp

Genome Length

4083318 bp

Protein-coding Genes

3166 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCMI66_04995Not AvailablePositive1230687 - 123095910547.2
peptidase s1CMI66_05000Not AvailablePositive1231062 - 123256452534.1
hypothetical proteinCMI66_05005Not AvailablePositive1232719 - 123359431971.0
glycosyl hydrolaseCMI66_05010Not AvailableNegative1233620 - 123479543965.5
hypothetical proteinCMI66_05015Not AvailablePositive1234979 - 123682370214.9
trna pseudouridine(38-40) synthase truaCMI66_05020Not AvailableNegative1236817 - 123762930486.6
hypothetical proteinCMI66_05025Not AvailablePositive1237628 - 123852133933.0
diaminopimelate epimeraseCMI66_05030Not AvailablePositive1238601 - 123941329140.1
4-hydroxy-tetrahydrodipicolinate synthaseCMI66_05035Not AvailablePositive1239425 - 124030031220.7
porphobilinogen synthaseCMI66_05040Not AvailablePositive1240348 - 124137037109.2

Displaying genes 981 – 990 of 6387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.