Pedosphaera sp.

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Pedosphaerae

Order

Pedosphaerales

Family

Pedosphaeraceae

Genus

Pedosphaera

Description

Pedosphaera sp. is characterized by having two replicons, which is notable for its genomic structure. The organism is associated with two specific accessions: NZFL00000000.1 and NZPE00000000.1. These accessions provide genetic information that can facilitate further studies on the species. As a member of the microbial community, Pedosphaera sp. likely plays a role in ecological processes, potentially influencing soil health and nutrient cycling. The presence of multiple replicons may suggest a level of genomic complexity that could be advantageous for adaptation to various environmental conditions. Understanding the genomic features of Pedosphaera sp. may offer insights into its metabolic capabilities and ecological functions. This can contribute to our knowledge of microbial diversity and the roles these organisms play in their habitats, particularly in soil ecosystems. The dual replicon structure may allow for a more versatile response to environmental stressors, although specific traits related to its ecological interactions remain uncharacterized. Overall, the genomic characteristics of Pedosphaera sp. indicate its potential significance in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassPedosphaerae
OrderPedosphaerales
FamilyPedosphaeraceae
GenusPedosphaera
SpeciesPedosphaera sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pedosphaera sp. isolate MED719 142300, whole genome shotgun

Gene Summary

Adenine Count

1062694 bp

Thymine Count

1068303 bp

Guanine Count

975602 bp

Cytosine Count

974492 bp

Genome Length

4083318 bp

Protein-coding Genes

3166 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sulfataseCMI66_13125Not AvailablePositive3276491 - 327792453159.2
methyltransferase type 12CMI66_13130Not AvailablePositive3277969 - 327867326921.4
phosphoribosylamine--glycine ligaseCMI66_13135Not AvailablePositive3278870 - 328016246491.4
hypothetical proteinCMI66_13140Not AvailablePositive3280284 - 328134838512.0
ribose 5-phosphate isomerase bCMI66_13145Not AvailablePositive3281404 - 328358479588.1
transcription termination factor rhoCMI66_13150Not AvailablePositive3283699 - 328562471339.8
3-octaprenyl-4-hydroxybenzoate carboxy-lyaseCMI66_13155Not AvailableNegative3285678 - 328623520239.8
dna-binding response regulatorCMI66_13160Not AvailablePositive3286380 - 328786155341.4
dead/deah box helicaseCMI66_13165Not AvailablePositive3287911 - 329046395786.8
hypothetical proteinCMI66_13170Not AvailableNegative3290496 - 329319299009.9

Displaying genes 2571 – 2580 of 6387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.