Pedosphaera sp.

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Pedosphaerae

Order

Pedosphaerales

Family

Pedosphaeraceae

Genus

Pedosphaera

Description

Pedosphaera sp. is characterized by having two replicons, which is notable for its genomic structure. The organism is associated with two specific accessions: NZFL00000000.1 and NZPE00000000.1. These accessions provide genetic information that can facilitate further studies on the species. As a member of the microbial community, Pedosphaera sp. likely plays a role in ecological processes, potentially influencing soil health and nutrient cycling. The presence of multiple replicons may suggest a level of genomic complexity that could be advantageous for adaptation to various environmental conditions. Understanding the genomic features of Pedosphaera sp. may offer insights into its metabolic capabilities and ecological functions. This can contribute to our knowledge of microbial diversity and the roles these organisms play in their habitats, particularly in soil ecosystems. The dual replicon structure may allow for a more versatile response to environmental stressors, although specific traits related to its ecological interactions remain uncharacterized. Overall, the genomic characteristics of Pedosphaera sp. indicate its potential significance in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassPedosphaerae
OrderPedosphaerales
FamilyPedosphaeraceae
GenusPedosphaera
SpeciesPedosphaera sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pedosphaera sp. isolate MED719 142300, whole genome shotgun

Gene Summary

Adenine Count

1062694 bp

Thymine Count

1068303 bp

Guanine Count

975602 bp

Cytosine Count

974492 bp

Genome Length

4083318 bp

Protein-coding Genes

3166 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dephospho-coa kinaseCMI66_11255Not AvailablePositive2817359 - 281796422669.2
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase iiCMI66_11260Not AvailablePositive2818063 - 281928644888.4
6,7-dimethyl-8-ribityllumazine synthaseCMI66_11265Not AvailablePositive2819462 - 281997118561.5
hypothetical proteinCMI66_11270Not AvailablePositive2820130 - 282083725515.8
hypothetical proteinCMI66_11275Not AvailablePositive2820921 - 282215945922.4
protoheme ix farnesyltransferaseCMI66_11280Not AvailablePositive2822156 - 282305833404.6
cytochrome c oxidase subunit iCMI66_11285Not AvailablePositive2823150 - 282500368144.6
hypothetical proteinCMI66_11290Not AvailablePositive2825028 - 282582830409.1
caa(3)-type oxidase subunit 4CMI66_11295Not AvailablePositive2825853 - 282617011524.7
hypothetical proteinCMI66_11300Not AvailablePositive2826193 - 28264027944.97

Displaying genes 2211 – 2220 of 6387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.