Pedosphaera sp.

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Pedosphaerae

Order

Pedosphaerales

Family

Pedosphaeraceae

Genus

Pedosphaera

Description

Pedosphaera sp. is characterized by having two replicons, which is notable for its genomic structure. The organism is associated with two specific accessions: NZFL00000000.1 and NZPE00000000.1. These accessions provide genetic information that can facilitate further studies on the species. As a member of the microbial community, Pedosphaera sp. likely plays a role in ecological processes, potentially influencing soil health and nutrient cycling. The presence of multiple replicons may suggest a level of genomic complexity that could be advantageous for adaptation to various environmental conditions. Understanding the genomic features of Pedosphaera sp. may offer insights into its metabolic capabilities and ecological functions. This can contribute to our knowledge of microbial diversity and the roles these organisms play in their habitats, particularly in soil ecosystems. The dual replicon structure may allow for a more versatile response to environmental stressors, although specific traits related to its ecological interactions remain uncharacterized. Overall, the genomic characteristics of Pedosphaera sp. indicate its potential significance in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassPedosphaerae
OrderPedosphaerales
FamilyPedosphaeraceae
GenusPedosphaera
SpeciesPedosphaera sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pedosphaera sp. isolate MED719 142300, whole genome shotgun

Gene Summary

Adenine Count

1062694 bp

Thymine Count

1068303 bp

Guanine Count

975602 bp

Cytosine Count

974492 bp

Genome Length

4083318 bp

Protein-coding Genes

3166 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-directed rna polymerase subunit beta'CMI66_01010Not AvailableNegative238704 - 242834153514.0
dna-directed rna polymerase subunit betaCMI66_01015Not AvailableNegative242886 - 246719141906.0
50s ribosomal protein l7/l12CMI66_01020Not AvailableNegative246948 - 24733413068.7
50s ribosomal protein l10CMI66_01025Not AvailableNegative247461 - 24797918965.7
50s ribosomal protein l1CMI66_01030Not AvailableNegative248011 - 24871525245.4
50s ribosomal protein l11CMI66_01035Not AvailableNegative248763 - 24918814947.4
transcription termination/antitermination protein nusgCMI66_01040Not AvailableNegative249195 - 24974321199.4
preprotein translocase subunit seceCMI66_01045Not AvailableNegative249763 - 2500149365.73
Trna-serNot AvailableNot AvailablePositive250032 - 250121Not Available
Trna-trpNot AvailableNot AvailablePositive250147 - 250222Not Available

Displaying genes 201 – 210 of 6387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.