Pedosphaera sp.

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Pedosphaerae

Order

Pedosphaerales

Family

Pedosphaeraceae

Genus

Pedosphaera

Description

Pedosphaera sp. is characterized by having two replicons, which is notable for its genomic structure. The organism is associated with two specific accessions: NZFL00000000.1 and NZPE00000000.1. These accessions provide genetic information that can facilitate further studies on the species. As a member of the microbial community, Pedosphaera sp. likely plays a role in ecological processes, potentially influencing soil health and nutrient cycling. The presence of multiple replicons may suggest a level of genomic complexity that could be advantageous for adaptation to various environmental conditions. Understanding the genomic features of Pedosphaera sp. may offer insights into its metabolic capabilities and ecological functions. This can contribute to our knowledge of microbial diversity and the roles these organisms play in their habitats, particularly in soil ecosystems. The dual replicon structure may allow for a more versatile response to environmental stressors, although specific traits related to its ecological interactions remain uncharacterized. Overall, the genomic characteristics of Pedosphaera sp. indicate its potential significance in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassPedosphaerae
OrderPedosphaerales
FamilyPedosphaeraceae
GenusPedosphaera
SpeciesPedosphaera sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pedosphaera sp. isolate MED719 142300, whole genome shotgun

Gene Summary

Adenine Count

1062694 bp

Thymine Count

1068303 bp

Guanine Count

975602 bp

Cytosine Count

974492 bp

Genome Length

4083318 bp

Protein-coding Genes

3166 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
proton-translocating nadh-quinone oxidoreductase subunit mCMI66_07695Not AvailablePositive1919837 - 192140256400.5
proton-translocating nadh-quinone oxidoreductase subunit nCMI66_07700Not AvailablePositive1921430 - 192287552133.5
iduronate-2-sulfataseCMI66_07705Not AvailableNegative1922912 - 192433352894.1
tlya family rrna (cytidine-2'-o)-methyltransferaseCMI66_07710Not AvailablePositive1924305 - 192517732514.0
atp-nad kinaseCMI66_07715Not AvailablePositive1925164 - 192606632935.5
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit aCMI66_07720Not AvailableNegative1926141 - 192759851762.2
asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit cCMI66_07725Not AvailableNegative1927629 - 192794311763.2
adenylate cyclaseCMI66_07730Not AvailablePositive1928248 - 192872118326.0
heme oxygenaseCMI66_07735Not AvailablePositive1929166 - 192996329822.6
abc transporterCMI66_07740Not AvailablePositive1930183 - 193089025631.1

Displaying genes 1511 – 1520 of 6387 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.