Methylorubrum extorquens strain TK 0001

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens strain TK 0001 is a Gram-negative, rod-shaped bacterium classified as a methylotroph, capable of utilizing methanol and other one-carbon compounds as its primary energy source. This strain exhibits a facultative aerobic metabolism, enabling it to thrive in varying oxygen conditions. Methylorubrum extorquens strain TK 0001 is characterized by its single or paired cell arrangement and possesses flagella, allowing for mobility. The optimal growth temperature for this strain is 25°C, placing it within the mesophilic temperature range. It has a unique cellular structure with two membranes and a single replicon, which is typical for certain members of the Methylobacteriaceae family. Methylorubrum extorquens strain TK 0001 is free-living and has been associated with hosts from the Viridiplantae kingdom, indicating a potential ecological role in plant-associated environments. Its ability to metabolize methanol can contribute to nutrient cycling in various habitats, enhancing soil health and plant growth. The presence of this strain in multiple habitats underscores its ecological versatility and potential importance in biogeochemical processes, particularly in carbon cycling. The accession number for further reference is NZ_LT962688.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
Strainstrain TK 0001

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens strain TK 0001
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Metaphire sieboldi
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens strain TK 0001 chromosome TK0001,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5340 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pilz domain-containing proteinTK0001_RS24760Not AvailablePositive5270193 - 527049210953.3
flagellinTK0001_RS28765Not AvailablePositive5271015 - 527277258864.7
response regulator transcription factorTK0001_RS24770Not AvailableNegative5272892 - 527357224992.1
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeTK0001_RS24775Not AvailablePositive5273957 - 527523445150.1
atp-dependent recd-like dna helicaseTK0001_RS24780Not AvailableNegative5275387 - 527650841376.3
oxygen-dependent coproporphyrinogen oxidaseTK0001_RS24785Not AvailableNegative5276556 - 527747934162.1
tonb-dependent siderophore receptorTK0001_RS24790Not AvailableNegative5277523 - 527969778267.2
flotillin family proteinTK0001_RS24795Not AvailableNegative5279901 - 528160761541.9
ob-fold-containig proteinTK0001_RS24800Not AvailableNegative5281644 - 528231222121.2
pspa/im30 family proteinTK0001_RS24805Not AvailableNegative5282309 - 528344841461.5

Displaying genes 5021 – 5030 of 5463 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.