Methylorubrum extorquens strain TK 0001

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens strain TK 0001 is a Gram-negative, rod-shaped bacterium classified as a methylotroph, capable of utilizing methanol and other one-carbon compounds as its primary energy source. This strain exhibits a facultative aerobic metabolism, enabling it to thrive in varying oxygen conditions. Methylorubrum extorquens strain TK 0001 is characterized by its single or paired cell arrangement and possesses flagella, allowing for mobility. The optimal growth temperature for this strain is 25°C, placing it within the mesophilic temperature range. It has a unique cellular structure with two membranes and a single replicon, which is typical for certain members of the Methylobacteriaceae family. Methylorubrum extorquens strain TK 0001 is free-living and has been associated with hosts from the Viridiplantae kingdom, indicating a potential ecological role in plant-associated environments. Its ability to metabolize methanol can contribute to nutrient cycling in various habitats, enhancing soil health and plant growth. The presence of this strain in multiple habitats underscores its ecological versatility and potential importance in biogeochemical processes, particularly in carbon cycling. The accession number for further reference is NZ_LT962688.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
Strainstrain TK 0001

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens strain TK 0001
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Metaphire sieboldi
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens strain TK 0001 chromosome TK0001,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5340 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arsr/smtb family transcription factorTK0001_RS24425Not AvailablePositive5200217 - 520056112813.2
srpbcc domain-containing proteinTK0001_RS28535Not AvailablePositive5200635 - 520091010296.1
hypothetical proteinTK0001_RS28540Not AvailablePositive5200894 - 52009954009.87
sodium:solute symporterTK0001_RS24435Not AvailablePositive5201020 - 520276862474.0
pyridoxamine 5'-phosphate oxidase family proteinTK0001_RS28545Not AvailablePositive5202779 - 52029677037.32
hypothetical proteinTK0001_RS28550Not AvailablePositive5203040 - 52032106224.87
duf3489 domain-containing proteinTK0001_RS24445Not AvailablePositive5204065 - 520460418993.2
duf2924 domain-containing proteinTK0001_RS24450Not AvailablePositive5204604 - 520515220105.1
recombinase family proteinTK0001_RS24455Not AvailablePositive5205145 - 520700467081.3
Trna-serNot AvailableNot AvailablePositive5207363 - 5207452Not Available

Displaying genes 4951 – 4960 of 5463 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.