Methylorubrum extorquens strain TK 0001

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens strain TK 0001 is a Gram-negative, rod-shaped bacterium classified as a methylotroph, capable of utilizing methanol and other one-carbon compounds as its primary energy source. This strain exhibits a facultative aerobic metabolism, enabling it to thrive in varying oxygen conditions. Methylorubrum extorquens strain TK 0001 is characterized by its single or paired cell arrangement and possesses flagella, allowing for mobility. The optimal growth temperature for this strain is 25°C, placing it within the mesophilic temperature range. It has a unique cellular structure with two membranes and a single replicon, which is typical for certain members of the Methylobacteriaceae family. Methylorubrum extorquens strain TK 0001 is free-living and has been associated with hosts from the Viridiplantae kingdom, indicating a potential ecological role in plant-associated environments. Its ability to metabolize methanol can contribute to nutrient cycling in various habitats, enhancing soil health and plant growth. The presence of this strain in multiple habitats underscores its ecological versatility and potential importance in biogeochemical processes, particularly in carbon cycling. The accession number for further reference is NZ_LT962688.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
Strainstrain TK 0001

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens strain TK 0001
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Metaphire sieboldi
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens strain TK 0001 chromosome TK0001,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5340 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinTK0001_RS26980Not AvailableNegative170102 - 1702484332.06
hypothetical proteinTK0001_RS00860Not AvailablePositive170995 - 17163323366.5
hypothetical proteinTK0001_RS00935Not AvailablePositive185158 - 18548712239.7
duf1833 family proteinTK0001_RS00940Not AvailablePositive185492 - 18603719279.5
tad domain-containing proteinTK0001_RS00945Not AvailablePositive186370 - 18773747473.5
glycoside hydrolaseTK0001_RS00950Not AvailablePositive187912 - 18831314708.6
pilz domain-containing proteinTK0001_RS00955Not AvailableNegative188341 - 18870313356.1
hypothetical proteinTK0001_RS00960Not AvailableNegative188947 - 1892229905.86
host specificity factor tipj family phage tail proteinTK0001_RS00965Not AvailablePositive189896 - 192949111266.0
hypothetical proteinTK0001_RS00970Not AvailablePositive192949 - 19376128528.9

Displaying genes 261 – 270 of 5463 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.