Xanthomonas fragariae strain PD5205

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas fragariae strain PD5205 is an aerobic, rod-shaped bacterium known for its pathogenicity in plants. It possesses flagella, which facilitates motility and potentially influences its infection capabilities. This strain has a single replicon, indicating a streamlined genomic structure that is often characteristic of bacteria within this genus. The primary host for X. fragariae strain PD5205 is Fragaria x ananassa, commonly known as the cultivated strawberry. This association suggests that the bacterium may play a significant role in affecting the health and yield of strawberry crops, which are economically important in agriculture. The specific accession number for this strain is NZ_LT853885.1, providing a reference point for further genetic and genomic studies. Understanding the traits of Xanthomonas fragariae, particularly its pathogenic relationship with strawberry plants, is crucial for developing effective management strategies in agricultural practices. The ecological insight from this information highlights the importance of Xanthomonas fragariae in the context of plant pathology, particularly in relation to crop health and food production. Effective management of this bacterium could have substantial implications for sustainable agriculture, particularly in regions where Fragaria x ananassa is a significant crop.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas fragariae
Strainstrain PD5205

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas fragariae strain PD5205
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Fragaria x ananassa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas fragariae strain PD5205 chromosome 1, complete

Gene Summary

Adenine Count

799566 bp

Thymine Count

796260 bp

Guanine Count

1318411 bp

Cytosine Count

1318407 bp

Genome Length

4232644 bp

Protein-coding Genes

3796 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPD5205_RS13310Not AvailablePositive2838390 - 28386629840.57
cest family type iii secretion system chaperonePD5205_RS13315Not AvailablePositive2838733 - 283920317648.1
pectate lyasePD5205_RS13320Not AvailablePositive2839466 - 284048534794.9
xopz family type iii secretion system effectorPD5205_RS13325Not AvailablePositive2840743 - 2844705142917.0
type iii secretion system effector xopf1PD5205_RS13330Not AvailableNegative2844813 - 284685872899.2
hpa3 family type iii secretion system proteinPD5205_RS13335Not AvailableNegative2846858 - 284730115494.0
glycerophosphodiester phosphodiesterase family proteinPD5205_RS13340Not AvailablePositive2847656 - 284810317378.1
duf378 domain-containing proteinPD5205_RS13345Not AvailablePositive2848287 - 28485298716.74
peptidylprolyl isomerasePD5205_RS13350Not AvailablePositive2848667 - 284957233145.3
Ncrna_class:otherNot AvailableNot AvailablePositive2849681 - 2849756Not Available

Displaying genes 2701 – 2710 of 3988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.