Xanthomonas fragariae strain PD5205

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas fragariae strain PD5205 is an aerobic, rod-shaped bacterium known for its pathogenicity in plants. It possesses flagella, which facilitates motility and potentially influences its infection capabilities. This strain has a single replicon, indicating a streamlined genomic structure that is often characteristic of bacteria within this genus. The primary host for X. fragariae strain PD5205 is Fragaria x ananassa, commonly known as the cultivated strawberry. This association suggests that the bacterium may play a significant role in affecting the health and yield of strawberry crops, which are economically important in agriculture. The specific accession number for this strain is NZ_LT853885.1, providing a reference point for further genetic and genomic studies. Understanding the traits of Xanthomonas fragariae, particularly its pathogenic relationship with strawberry plants, is crucial for developing effective management strategies in agricultural practices. The ecological insight from this information highlights the importance of Xanthomonas fragariae in the context of plant pathology, particularly in relation to crop health and food production. Effective management of this bacterium could have substantial implications for sustainable agriculture, particularly in regions where Fragaria x ananassa is a significant crop.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas fragariae
Strainstrain PD5205

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas fragariae strain PD5205
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Fragaria x ananassa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas fragariae strain PD5205 chromosome 1, complete

Gene Summary

Adenine Count

799566 bp

Thymine Count

796260 bp

Guanine Count

1318411 bp

Cytosine Count

1318407 bp

Genome Length

4232644 bp

Protein-coding Genes

3796 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar basal body l-ring protein flghPD5205_RS10595Not AvailablePositive2264697 - 226538923839.5
flagellar basal body p-ring protein flgiPD5205_RS10600Not AvailablePositive2265400 - 226651837651.4
flagellar assembly peptidoglycan hydrolase flgjPD5205_RS10605Not AvailablePositive2266520 - 226770439934.4
flagellar hook-associated protein flgkPD5205_RS10610Not AvailablePositive2267716 - 226959063648.3
flagellar hook-associated protein flglPD5205_RS10615Not AvailablePositive2269590 - 227079541935.9
flagellinPD5205_RS10620Not AvailablePositive2271113 - 227231240534.0
flagellar filament capping protein flidPD5205_RS10625Not AvailablePositive2272564 - 227388944604.1
flagellar export chaperone flisPD5205_RS10630Not AvailablePositive2274039 - 227445214538.2
hypothetical proteinPD5205_RS10635Not AvailablePositive2274461 - 227475411407.8
pilz domain-containing proteinPD5205_RS10640Not AvailablePositive2274754 - 227532020493.4

Displaying genes 2151 – 2160 of 3988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.