Xanthomonas fragariae strain PD5205

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas fragariae strain PD5205 is an aerobic, rod-shaped bacterium known for its pathogenicity in plants. It possesses flagella, which facilitates motility and potentially influences its infection capabilities. This strain has a single replicon, indicating a streamlined genomic structure that is often characteristic of bacteria within this genus. The primary host for X. fragariae strain PD5205 is Fragaria x ananassa, commonly known as the cultivated strawberry. This association suggests that the bacterium may play a significant role in affecting the health and yield of strawberry crops, which are economically important in agriculture. The specific accession number for this strain is NZ_LT853885.1, providing a reference point for further genetic and genomic studies. Understanding the traits of Xanthomonas fragariae, particularly its pathogenic relationship with strawberry plants, is crucial for developing effective management strategies in agricultural practices. The ecological insight from this information highlights the importance of Xanthomonas fragariae in the context of plant pathology, particularly in relation to crop health and food production. Effective management of this bacterium could have substantial implications for sustainable agriculture, particularly in regions where Fragaria x ananassa is a significant crop.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas fragariae
Strainstrain PD5205

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas fragariae strain PD5205
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Fragaria x ananassa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas fragariae strain PD5205 chromosome 1, complete

Gene Summary

Adenine Count

799566 bp

Thymine Count

796260 bp

Guanine Count

1318411 bp

Cytosine Count

1318407 bp

Genome Length

4232644 bp

Protein-coding Genes

3796 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
replication-associated recombination protein aPD5205_RS10445Not AvailableNegative2230309 - 223168550675.5
outer membrane lipoprotein chaperone lolaPD5205_RS10450Not AvailableNegative2231762 - 223243324670.1
duf3857 domain-containing transglutaminase family proteinPD5205_RS10455Not AvailableNegative2232498 - 223442370882.9
dna translocase ftskPD5205_RS10460Not AvailableNegative2234625 - 223697984962.8
thioredoxin-disulfide reductasePD5205_RS10465Not AvailablePositive2237264 - 223823234426.8
gnat family n-acetyltransferasePD5205_RS10470Not AvailablePositive2238290 - 223940842343.9
leucyl/phenylalanyl-trna--protein transferasePD5205_RS10475Not AvailablePositive2239655 - 224040427707.2
translation initiation factor if-1PD5205_RS10480Not AvailablePositive2240484 - 22407028376.16
atp-dependent clp protease atp-binding subunit clpaPD5205_RS10485Not AvailableNegative2240973 - 224325583547.3
atp-dependent clp protease adapter clpsPD5205_RS10490Not AvailableNegative2243399 - 224371912080.5

Displaying genes 2121 – 2130 of 3988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.