Xanthomonas fragariae strain PD5205

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas fragariae strain PD5205 is an aerobic, rod-shaped bacterium known for its pathogenicity in plants. It possesses flagella, which facilitates motility and potentially influences its infection capabilities. This strain has a single replicon, indicating a streamlined genomic structure that is often characteristic of bacteria within this genus. The primary host for X. fragariae strain PD5205 is Fragaria x ananassa, commonly known as the cultivated strawberry. This association suggests that the bacterium may play a significant role in affecting the health and yield of strawberry crops, which are economically important in agriculture. The specific accession number for this strain is NZ_LT853885.1, providing a reference point for further genetic and genomic studies. Understanding the traits of Xanthomonas fragariae, particularly its pathogenic relationship with strawberry plants, is crucial for developing effective management strategies in agricultural practices. The ecological insight from this information highlights the importance of Xanthomonas fragariae in the context of plant pathology, particularly in relation to crop health and food production. Effective management of this bacterium could have substantial implications for sustainable agriculture, particularly in regions where Fragaria x ananassa is a significant crop.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas fragariae
Strainstrain PD5205

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas fragariae strain PD5205
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Fragaria x ananassa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas fragariae strain PD5205 chromosome 1, complete

Gene Summary

Adenine Count

799566 bp

Thymine Count

796260 bp

Guanine Count

1318411 bp

Cytosine Count

1318407 bp

Genome Length

4232644 bp

Protein-coding Genes

3796 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosome-binding factor rbfaPD5205_RS07555Not AvailablePositive1609591 - 160998314671.3
trna pseudouridine(55) synthase trubPD5205_RS07560Not AvailablePositive1610071 - 161099732991.2
30s ribosomal protein s15PD5205_RS07565Not AvailablePositive1611155 - 161141510096.3
polyribonucleotide nucleotidyltransferasePD5205_RS07570Not AvailablePositive1611585 - 161369975690.2
is5 family transposasePD5205_RS07575Not AvailablePositive1613976 - 161478130392.4
Ncrna_class:otherNot AvailableNot AvailablePositive1614840 - 1614913Not Available
glycerophosphodiester phosphodiesterase family proteinPD5205_RS20490Not AvailableNegative1614916 - 16150264419.54
carboxylating nicotinate-nucleotide diphosphorylasePD5205_RS07585Not AvailableNegative1615136 - 161602331460.8
trm112 family proteinPD5205_RS07590Not AvailableNegative1616020 - 16162899705.72
5-(carboxyamino)imidazole ribonucleotide mutasePD5205_RS07595Not AvailablePositive1616348 - 161685117158.7

Displaying genes 1561 – 1570 of 3988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.