Xanthomonas fragariae strain PD5205

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas fragariae strain PD5205 is an aerobic, rod-shaped bacterium known for its pathogenicity in plants. It possesses flagella, which facilitates motility and potentially influences its infection capabilities. This strain has a single replicon, indicating a streamlined genomic structure that is often characteristic of bacteria within this genus. The primary host for X. fragariae strain PD5205 is Fragaria x ananassa, commonly known as the cultivated strawberry. This association suggests that the bacterium may play a significant role in affecting the health and yield of strawberry crops, which are economically important in agriculture. The specific accession number for this strain is NZ_LT853885.1, providing a reference point for further genetic and genomic studies. Understanding the traits of Xanthomonas fragariae, particularly its pathogenic relationship with strawberry plants, is crucial for developing effective management strategies in agricultural practices. The ecological insight from this information highlights the importance of Xanthomonas fragariae in the context of plant pathology, particularly in relation to crop health and food production. Effective management of this bacterium could have substantial implications for sustainable agriculture, particularly in regions where Fragaria x ananassa is a significant crop.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas fragariae
Strainstrain PD5205

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas fragariae strain PD5205
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Fragaria x ananassa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas fragariae strain PD5205 chromosome 1, complete

Gene Summary

Adenine Count

799566 bp

Thymine Count

796260 bp

Guanine Count

1318411 bp

Cytosine Count

1318407 bp

Genome Length

4232644 bp

Protein-coding Genes

3796 genes

Non-Coding Genes

192 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion system effector xopqPD5205_RS05750Not AvailableNegative1224244 - 122559048919.3
type iii secretion system effector xopavPD5205_RS22280Not AvailablePositive1225944 - 122670827027.1
tetr/acrr family transcriptional regulatorPD5205_RS05760Not AvailableNegative1226816 - 122744523658.1
histidine phosphatase family proteinPD5205_RS05765Not AvailablePositive1227632 - 122841128152.4
nad(p)h-hydrate dehydratasePD5205_RS05770Not AvailablePositive1228411 - 122928028798.4
glycerophosphodiester phosphodiesterase family proteinPD5205_RS05775Not AvailableNegative1229392 - 123084153345.5
is5 family transposasePD5205_RS05780Not AvailableNegative1230848 - 123165430357.5
glycerophosphodiester phosphodiesterase family proteinPD5205_RS20405Not AvailableNegative1231698 - 123204412059.2
sdr family oxidoreductasePD5205_RS05790Not AvailableNegative1232041 - 123294332012.9
glycerophosphodiester phosphodiesterase family proteinPD5205_RS05795Not AvailableNegative1233366 - 123434734643.5

Displaying genes 1201 – 1210 of 3988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.