Candidatus Pelagibacter sp. HIMB1321

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter sp. HIMB1321 is a Gram-negative bacterium characterized by its bacilli shape. It is notable for having a single replicon, which is significant in its genomic organization and replication process. The organism is classified under the family of Pelagibacteraceae, which includes some of the most abundant bacteria in the ocean. The accession number for Candidatus Pelagibacter sp. HIMB1321 is NZ_LT840186.1, providing a reference for researchers interested in its genetic and genomic information. This specific strain is part of a group that plays a crucial role in marine ecosystems, particularly in the cycling of organic matter and nutrients in ocean waters. One of the ecological insights into Candidatus Pelagibacter sp. HIMB1321 is its potential contribution to the microbial loop in marine environments. These bacteria are believed to be involved in the decomposition of organic materials, thus influencing the availability of nutrients for other marine organisms. Their abundance and metabolic capabilities suggest that they play a vital role in maintaining the health and balance of marine ecosystems. The study of Candidatus Pelagibacter sp. HIMB1321 can enhance our understanding of microbial dynamics and nutrient cycling in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter sp. HIMB1321
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter sp. HIMB1321 chromosome I.

Gene Summary

Adenine Count

466772 bp

Thymine Count

470406 bp

Guanine Count

190803 bp

Cytosine Count

192668 bp

Genome Length

1320749 bp

Protein-coding Genes

1384 genes

Non-Coding Genes

36 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease iiiB9N70_RS02990Not AvailableNegative548231 - 54889325357.3
signal peptidase iB9N70_RS02995Not AvailableNegative548893 - 54962728369.4
holo-acp synthaseB9N70_RS03000Not AvailableNegative549627 - 55001314856.2
pyridoxine 5'-phosphate synthaseB9N70_RS03005Not AvailableNegative550013 - 55072927272.7
orotate phosphoribosyltransferaseB9N70_RS03010Not AvailableNegative550726 - 55131321705.5
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseB9N70_RS03015Not AvailableNegative551270 - 55301567182.9
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseB9N70_RS03020Not AvailableNegative553037 - 55351318346.8
ssra-binding protein smpbB9N70_RS03025Not AvailableNegative553513 - 55398317981.1
4-hydroxy-tetrahydrodipicolinate synthaseB9N70_RS03030Not AvailableNegative553983 - 55486431740.1
lytic transglycosylase domain-containing proteinB9N70_RS03035Not AvailablePositive554907 - 55712686525.8

Displaying genes 601 – 610 of 1420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.