Candidatus Pelagibacter sp. HIMB1321

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter sp. HIMB1321 is a Gram-negative bacterium characterized by its bacilli shape. It is notable for having a single replicon, which is significant in its genomic organization and replication process. The organism is classified under the family of Pelagibacteraceae, which includes some of the most abundant bacteria in the ocean. The accession number for Candidatus Pelagibacter sp. HIMB1321 is NZ_LT840186.1, providing a reference for researchers interested in its genetic and genomic information. This specific strain is part of a group that plays a crucial role in marine ecosystems, particularly in the cycling of organic matter and nutrients in ocean waters. One of the ecological insights into Candidatus Pelagibacter sp. HIMB1321 is its potential contribution to the microbial loop in marine environments. These bacteria are believed to be involved in the decomposition of organic materials, thus influencing the availability of nutrients for other marine organisms. Their abundance and metabolic capabilities suggest that they play a vital role in maintaining the health and balance of marine ecosystems. The study of Candidatus Pelagibacter sp. HIMB1321 can enhance our understanding of microbial dynamics and nutrient cycling in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter sp. HIMB1321
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter sp. HIMB1321 chromosome I.

Gene Summary

Adenine Count

466772 bp

Thymine Count

470406 bp

Guanine Count

190803 bp

Cytosine Count

192668 bp

Genome Length

1320749 bp

Protein-coding Genes

1384 genes

Non-Coding Genes

36 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron-containing alcohol dehydrogenaseB9N70_RS06710Not AvailablePositive1249556 - 125073742730.4
trap transporter substrate-binding proteinB9N70_RS06715Not AvailablePositive1250802 - 125186639465.5
trap transporter small permease subunitB9N70_RS06720Not AvailablePositive1251943 - 125251222153.6
trap transporter large permeaseB9N70_RS06725Not AvailablePositive1252509 - 125387348838.3
hypothetical proteinB9N70_RS06730Not AvailablePositive1253879 - 125432517369.9
malate dehydrogenaseB9N70_RS06735Not AvailablePositive1254383 - 125534834541.2
adp-forming succinate--coa ligase subunit betaB9N70_RS06740Not AvailablePositive1255348 - 125650842100.0
succinate--coa ligase subunit alphaB9N70_RS06745Not AvailablePositive1256508 - 125738330539.3
2-oxoglutarate dehydrogenase e1 componentB9N70_RS06750Not AvailablePositive1257419 - 1260313110145.0
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseB9N70_RS06755Not AvailablePositive1260320 - 126162147932.7

Displaying genes 1351 – 1360 of 1420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.