Candidatus Pelagibacter sp. HIMB1321

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter sp. HIMB1321 is a Gram-negative bacterium characterized by its bacilli shape. It is notable for having a single replicon, which is significant in its genomic organization and replication process. The organism is classified under the family of Pelagibacteraceae, which includes some of the most abundant bacteria in the ocean. The accession number for Candidatus Pelagibacter sp. HIMB1321 is NZ_LT840186.1, providing a reference for researchers interested in its genetic and genomic information. This specific strain is part of a group that plays a crucial role in marine ecosystems, particularly in the cycling of organic matter and nutrients in ocean waters. One of the ecological insights into Candidatus Pelagibacter sp. HIMB1321 is its potential contribution to the microbial loop in marine environments. These bacteria are believed to be involved in the decomposition of organic materials, thus influencing the availability of nutrients for other marine organisms. Their abundance and metabolic capabilities suggest that they play a vital role in maintaining the health and balance of marine ecosystems. The study of Candidatus Pelagibacter sp. HIMB1321 can enhance our understanding of microbial dynamics and nutrient cycling in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter sp. HIMB1321
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter sp. HIMB1321 chromosome I.

Gene Summary

Adenine Count

466772 bp

Thymine Count

470406 bp

Guanine Count

190803 bp

Cytosine Count

192668 bp

Genome Length

1320749 bp

Protein-coding Genes

1384 genes

Non-Coding Genes

36 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
twin transmembrane helix small proteinB9N70_RS05820Not AvailablePositive1085524 - 10857277451.83
tlpa family protein disulfide reductaseB9N70_RS05825Not AvailableNegative1085724 - 108623319733.0
argininosuccinate lyaseB9N70_RS05830Not AvailablePositive1086258 - 108764953509.3
diaminopimelate decarboxylaseB9N70_RS05835Not AvailablePositive1087777 - 108899145585.8
lysophospholipid acyltransferase family proteinB9N70_RS05840Not AvailablePositive1089003 - 108970426854.7
dna polymerase iii subunit betaB9N70_RS05845Not AvailableNegative1089701 - 109081341822.9
chromosomal replication initiator protein dnaaB9N70_RS05850Not AvailableNegative1090803 - 109222455371.0
30s ribosomal protein s20B9N70_RS05855Not AvailableNegative1092502 - 10927629853.49
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseB9N70_RS05860Not AvailableNegative1092813 - 109367633688.3
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieB9N70_RS05865Not AvailablePositive1093708 - 109441226729.6

Displaying genes 1171 – 1180 of 1420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.