Candidatus Pelagibacter sp. HIMB1321

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter sp. HIMB1321 is a Gram-negative bacterium characterized by its bacilli shape. It is notable for having a single replicon, which is significant in its genomic organization and replication process. The organism is classified under the family of Pelagibacteraceae, which includes some of the most abundant bacteria in the ocean. The accession number for Candidatus Pelagibacter sp. HIMB1321 is NZ_LT840186.1, providing a reference for researchers interested in its genetic and genomic information. This specific strain is part of a group that plays a crucial role in marine ecosystems, particularly in the cycling of organic matter and nutrients in ocean waters. One of the ecological insights into Candidatus Pelagibacter sp. HIMB1321 is its potential contribution to the microbial loop in marine environments. These bacteria are believed to be involved in the decomposition of organic materials, thus influencing the availability of nutrients for other marine organisms. Their abundance and metabolic capabilities suggest that they play a vital role in maintaining the health and balance of marine ecosystems. The study of Candidatus Pelagibacter sp. HIMB1321 can enhance our understanding of microbial dynamics and nutrient cycling in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter sp. HIMB1321
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter sp. HIMB1321 chromosome I.

Gene Summary

Adenine Count

466772 bp

Thymine Count

470406 bp

Guanine Count

190803 bp

Cytosine Count

192668 bp

Genome Length

1320749 bp

Protein-coding Genes

1384 genes

Non-Coding Genes

36 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
vacj family lipoproteinB9N70_RS00510Not AvailableNegative91492 - 9227728767.0
n-acetylmuramoyl-l-alanine amidaseB9N70_RS00515Not AvailablePositive92406 - 9307425948.9
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive93120 - 93477Not Available
division/cell wall cluster transcriptional repressor mrazB9N70_RS00525Not AvailablePositive93738 - 9420517690.1
cell division protein ftszB9N70_RS00530Not AvailablePositive94209 - 9569053290.5
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhB9N70_RS00535Not AvailablePositive95709 - 9671938899.3
hypothetical proteinB9N70_RS00540Not AvailablePositive96716 - 9702411888.5
peptidoglycan d,d-transpeptidase ftsi family proteinB9N70_RS00545Not AvailablePositive97021 - 9870363315.3
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseB9N70_RS00550Not AvailablePositive98706 - 101567109319.0
phospho-n-acetylmuramoyl-pentapeptide- transferaseB9N70_RS00555Not AvailablePositive101557 - 10264239859.1

Displaying genes 101 – 110 of 1420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.