Candidatus Pelagibacter sp. HIMB1321

Gram-negativeBacilli

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter sp. HIMB1321 is a Gram-negative bacterium characterized by its bacilli shape. It is notable for having a single replicon, which is significant in its genomic organization and replication process. The organism is classified under the family of Pelagibacteraceae, which includes some of the most abundant bacteria in the ocean. The accession number for Candidatus Pelagibacter sp. HIMB1321 is NZ_LT840186.1, providing a reference for researchers interested in its genetic and genomic information. This specific strain is part of a group that plays a crucial role in marine ecosystems, particularly in the cycling of organic matter and nutrients in ocean waters. One of the ecological insights into Candidatus Pelagibacter sp. HIMB1321 is its potential contribution to the microbial loop in marine environments. These bacteria are believed to be involved in the decomposition of organic materials, thus influencing the availability of nutrients for other marine organisms. Their abundance and metabolic capabilities suggest that they play a vital role in maintaining the health and balance of marine ecosystems. The study of Candidatus Pelagibacter sp. HIMB1321 can enhance our understanding of microbial dynamics and nutrient cycling in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter sp. HIMB1321
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter sp. HIMB1321 chromosome I.

Gene Summary

Adenine Count

466772 bp

Thymine Count

470406 bp

Guanine Count

190803 bp

Cytosine Count

192668 bp

Genome Length

1320749 bp

Protein-coding Genes

1384 genes

Non-Coding Genes

36 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
proton-translocating transhydrogenase family proteinB9N70_RS05030Not AvailableNegative924152 - 92446011066.0
nad(p) transhydrogenase subunit alphaB9N70_RS05035Not AvailableNegative924464 - 92555239926.6
aa3-type cytochrome c oxidase subunit ivB9N70_RS05040Not AvailableNegative925566 - 9256764221.29
type b 50s ribosomal protein l36B9N70_RS05045Not AvailableNegative925681 - 9258064929.3
nad-dependent epimerase/dehydratase family proteinB9N70_RS05050Not AvailableNegative925809 - 92669033726.9
5s ribosomal rnaNot AvailableNot AvailablePositive926699 - 926813Not Available
glycosyltransferase family 2 proteinB9N70_RS05060Not AvailableNegative926879 - 92760127780.7
lic_10190 family membrane proteinB9N70_RS05065Not AvailableNegative927601 - 92924465549.9
sdr family nad(p)-dependent oxidoreductaseB9N70_RS05070Not AvailableNegative929254 - 93148586486.6
mray family glycosyltransferaseB9N70_RS05075Not AvailableNegative931451 - 93247940831.9

Displaying genes 1011 – 1020 of 1420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.