Sterolibacterium denitrificans strain Chol

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Sterolibacteriaceae

Genus

Sterolibacterium

Description

Sterolibacterium denitrificans strain Chol is characterized by having three replicons, which are distinct DNA molecules within its genome. This trait may contribute to its genetic diversity and adaptability. The strain is cataloged under several accession numbers: NZ_LT837803.1, NZ_LT837805.1, and NZ_LT837806.1, which can be used to locate its genomic data in biological databases for further study. The presence of multiple replicons in Sterolibacterium denitrificans suggests a complex genomic architecture, which is often associated with bacteria that occupy specialized ecological niches. This complexity may enhance its capacity for metabolic versatility, potentially allowing it to thrive in diverse environments. Such traits are particularly relevant for denitrifying bacteria, which play crucial roles in nitrogen cycling and can influence soil and aquatic ecosystems. In summary, the genomic structure of Sterolibacterium denitrificans strain Chol, with its three replicons, reflects its potential adaptability and ecological significance. Understanding the genomic features of this strain can provide insights into its role in biogeochemical processes, particularly in denitrification, which is essential for maintaining nitrogen balance in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilySterolibacteriaceae
GenusSterolibacterium
SpeciesSterolibacterium denitrificans
Strainstrain Chol

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sterolibacterium denitrificans strain Chol plasmid SDENCHOLpc,

Gene Summary

Adenine Count

3531 bp

Thymine Count

3975 bp

Guanine Count

6110 bp

Cytosine Count

6331 bp

Genome Length

19947 bp

Protein-coding Genes

22 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSDENCHOL_RS00935Not AvailableNegative207212 - 20772718792.7
ycei family proteinSDENCHOL_RS00940Not AvailableNegative207724 - 20831720939.2
cytochrome bSDENCHOL_RS00945Not AvailableNegative208317 - 20887720938.5
accessory factor ubik family proteinSDENCHOL_RS00950Not AvailableNegative209047 - 2092958975.75
formyltetrahydrofolate deformylaseSDENCHOL_RS00955Not AvailableNegative209330 - 21020233066.7
bifunctional phosphoserine phosphatase/homoserine phosphotransferase thrhSDENCHOL_RS00960Not AvailableNegative210214 - 21082223100.2
yqge/algh family proteinSDENCHOL_RS00965Not AvailablePositive210906 - 21149921481.7
holliday junction resolvase ruvxSDENCHOL_RS00970Not AvailablePositive211492 - 21193516265.3
bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase pyrrSDENCHOL_RS00975Not AvailablePositive211907 - 21245819891.9
aspartate carbamoyltransferase catalytic subunitSDENCHOL_RS00980Not AvailablePositive212451 - 21342235438.1

Displaying genes 251 – 260 of 2767 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.