Sterolibacterium denitrificans strain Chol

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Sterolibacteriaceae

Genus

Sterolibacterium

Description

Sterolibacterium denitrificans strain Chol is characterized by having three replicons, which are distinct DNA molecules within its genome. This trait may contribute to its genetic diversity and adaptability. The strain is cataloged under several accession numbers: NZ_LT837803.1, NZ_LT837805.1, and NZ_LT837806.1, which can be used to locate its genomic data in biological databases for further study. The presence of multiple replicons in Sterolibacterium denitrificans suggests a complex genomic architecture, which is often associated with bacteria that occupy specialized ecological niches. This complexity may enhance its capacity for metabolic versatility, potentially allowing it to thrive in diverse environments. Such traits are particularly relevant for denitrifying bacteria, which play crucial roles in nitrogen cycling and can influence soil and aquatic ecosystems. In summary, the genomic structure of Sterolibacterium denitrificans strain Chol, with its three replicons, reflects its potential adaptability and ecological significance. Understanding the genomic features of this strain can provide insights into its role in biogeochemical processes, particularly in denitrification, which is essential for maintaining nitrogen balance in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilySterolibacteriaceae
GenusSterolibacterium
SpeciesSterolibacterium denitrificans
Strainstrain Chol

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sterolibacterium denitrificans strain Chol plasmid SDENCHOLpc,

Gene Summary

Adenine Count

3531 bp

Thymine Count

3975 bp

Guanine Count

6110 bp

Cytosine Count

6331 bp

Genome Length

19947 bp

Protein-coding Genes

22 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulator transcription factorSDENCHOL_RS11345Not AvailableNegative2530312 - 253094423333.2
sensor histidine kinaseSDENCHOL_RS11350Not AvailableNegative2530941 - 253223346731.6
gsph/fimt family pseudopilinSDENCHOL_RS11355Not AvailablePositive2532416 - 253294318850.9
type iv pilus modification protein pilvSDENCHOL_RS11360Not AvailablePositive2532940 - 253342217480.1
pilw family proteinSDENCHOL_RS11365Not AvailablePositive2533419 - 253443536790.1
pilx n-terminal domain-containing pilus assembly proteinSDENCHOL_RS11370Not AvailablePositive2534437 - 253503620839.7
pilus assembly proteinSDENCHOL_RS11375Not AvailablePositive2535083 - 2538583125876.0
type iv pilin proteinSDENCHOL_RS14650Not AvailablePositive2538604 - 253901714515.4
trna epoxyqueuosine(34) reductase quegSDENCHOL_RS11385Not AvailableNegative2539061 - 254014940173.2
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeSDENCHOL_RS11390Not AvailablePositive2540186 - 254074320188.8

Displaying genes 2321 – 2330 of 2767 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.