Sterolibacterium denitrificans strain Chol

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Sterolibacteriaceae

Genus

Sterolibacterium

Description

Sterolibacterium denitrificans strain Chol is characterized by having three replicons, which are distinct DNA molecules within its genome. This trait may contribute to its genetic diversity and adaptability. The strain is cataloged under several accession numbers: NZ_LT837803.1, NZ_LT837805.1, and NZ_LT837806.1, which can be used to locate its genomic data in biological databases for further study. The presence of multiple replicons in Sterolibacterium denitrificans suggests a complex genomic architecture, which is often associated with bacteria that occupy specialized ecological niches. This complexity may enhance its capacity for metabolic versatility, potentially allowing it to thrive in diverse environments. Such traits are particularly relevant for denitrifying bacteria, which play crucial roles in nitrogen cycling and can influence soil and aquatic ecosystems. In summary, the genomic structure of Sterolibacterium denitrificans strain Chol, with its three replicons, reflects its potential adaptability and ecological significance. Understanding the genomic features of this strain can provide insights into its role in biogeochemical processes, particularly in denitrification, which is essential for maintaining nitrogen balance in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilySterolibacteriaceae
GenusSterolibacterium
SpeciesSterolibacterium denitrificans
Strainstrain Chol

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sterolibacterium denitrificans strain Chol plasmid SDENCHOLpc,

Gene Summary

Adenine Count

3531 bp

Thymine Count

3975 bp

Guanine Count

6110 bp

Cytosine Count

6331 bp

Genome Length

19947 bp

Protein-coding Genes

22 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type 4b pilus protein pilo2SDENCHOL_RS09535Not AvailablePositive2109649 - 211095348375.5
type iv pilus biogenesis protein pilpSDENCHOL_RS09540Not AvailablePositive2110940 - 211142517331.0
gspe/pule family proteinSDENCHOL_RS09545Not AvailablePositive2111430 - 211296256704.7
type ii secretion system f family proteinSDENCHOL_RS09550Not AvailablePositive2112983 - 211408340734.5
type 4 pilus major pilinSDENCHOL_RS09555Not AvailablePositive2114143 - 211472419681.6
atpase, t2ss/t4p/t4ss familySDENCHOL_RS09560Not AvailablePositive2114908 - 211587035180.4
hypothetical proteinSDENCHOL_RS09565Not AvailablePositive2115870 - 211644520827.8
shufflon system plasmid conjugative transfer pilus tip adhesin pilvSDENCHOL_RS09570Not AvailablePositive2116450 - 211792254030.0
shufflon system plasmid conjugative transfer pilus tip adhesin pilvSDENCHOL_RS09575Not AvailablePositive2117979 - 211938551266.1
helix-turn-helix transcriptional regulatorSDENCHOL_RS09580Not AvailableNegative2119467 - 212028231074.2

Displaying genes 1971 – 1980 of 2767 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.