Sterolibacterium denitrificans strain Chol

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Sterolibacteriaceae

Genus

Sterolibacterium

Description

Sterolibacterium denitrificans strain Chol is characterized by having three replicons, which are distinct DNA molecules within its genome. This trait may contribute to its genetic diversity and adaptability. The strain is cataloged under several accession numbers: NZ_LT837803.1, NZ_LT837805.1, and NZ_LT837806.1, which can be used to locate its genomic data in biological databases for further study. The presence of multiple replicons in Sterolibacterium denitrificans suggests a complex genomic architecture, which is often associated with bacteria that occupy specialized ecological niches. This complexity may enhance its capacity for metabolic versatility, potentially allowing it to thrive in diverse environments. Such traits are particularly relevant for denitrifying bacteria, which play crucial roles in nitrogen cycling and can influence soil and aquatic ecosystems. In summary, the genomic structure of Sterolibacterium denitrificans strain Chol, with its three replicons, reflects its potential adaptability and ecological significance. Understanding the genomic features of this strain can provide insights into its role in biogeochemical processes, particularly in denitrification, which is essential for maintaining nitrogen balance in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilySterolibacteriaceae
GenusSterolibacterium
SpeciesSterolibacterium denitrificans
Strainstrain Chol

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sterolibacterium denitrificans strain Chol plasmid SDENCHOLpc,

Gene Summary

Adenine Count

3531 bp

Thymine Count

3975 bp

Guanine Count

6110 bp

Cytosine Count

6331 bp

Genome Length

19947 bp

Protein-coding Genes

22 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
proline--trna ligaseSDENCHOL_RS00435Not AvailablePositive86721 - 8846064226.2
lytic transglycosylase domain-containing proteinSDENCHOL_RS00440Not AvailablePositive88451 - 8907423788.9
duf2145 domain-containing proteinSDENCHOL_RS00445Not AvailableNegative89091 - 8992730145.2
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaSDENCHOL_RS00450Not AvailableNegative89937 - 9074029018.5
4-hydroxythreonine-4-phosphate dehydrogenase pdxaSDENCHOL_RS00455Not AvailableNegative90737 - 9169934089.5
peptidylprolyl isomeraseSDENCHOL_RS00460Not AvailableNegative91696 - 9301849155.6
lps-assembly protein lptdSDENCHOL_RS00465Not AvailableNegative93101 - 9551588872.4
aminoglycoside phosphotransferase family proteinSDENCHOL_RS00470Not AvailablePositive95612 - 9662539094.8
class i sam-dependent methyltransferaseSDENCHOL_RS00475Not AvailablePositive96629 - 9790947688.2
n-acetylmuramate alpha-1-phosphate uridylyltransferase muruSDENCHOL_RS00480Not AvailablePositive97906 - 9860725070.7

Displaying genes 151 – 160 of 2767 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.