Nitrospira japonica

Kingdom

Pseudomonadati

Phylum

Nitrospirota

Class

Nitrospiria

Order

Nitrospirales

Family

Nitrospiraceae

Genus

Nitrospira

Description

Nitrospira japonica is a noteworthy species within the Nitrospira genus, characterized by its single replicon structure. This trait is significant as it contributes to the organism's genetic stability and adaptability. The species is cataloged under the accession number NZ_LT828648.1, which provides a reference for researchers exploring its genetic and functional attributes. Nitrospira japonica is recognized for its role in the nitrogen cycle, specifically in the oxidation of nitrite to nitrate. This process is essential for maintaining soil and aquatic ecosystems, as it facilitates nutrient availability for various organisms. The efficient conversion of nitrite to nitrate by Nitrospira japonica underscores its importance in promoting plant growth and supporting overall ecosystem health. In summary, Nitrospira japonica, with its single replicon and documented genetic information, plays a crucial role in the nitrogen cycle. Its ability to contribute to the oxidation of nitrite highlights its ecological significance, particularly in nutrient cycling within various environments. Understanding the functions and behaviors of such microorganisms can provide insights into ecosystem management and the maintenance of environmental health.

Taxonomy

KingdomPseudomonadati
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrospira japonica isolate Genome sequencing of Nitrospira

Gene Summary

Adenine Count

840259 bp

Thymine Count

836182 bp

Guanine Count

1204330 bp

Cytosine Count

1204046 bp

Genome Length

4084817 bp

Protein-coding Genes

3741 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gsph/fimt family pseudopilinNSJP_RS03350Not AvailableNegative682982 - 68344316485.2
prepilin peptidaseNSJP_RS03355Not AvailableNegative683657 - 68443327548.6
luxr c-terminal-related transcriptional regulatorNSJP_RS03360Not AvailablePositive684618 - 68489310391.0
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbNSJP_RS03365Not AvailableNegative684880 - 68566528153.3
cysteine--trna ligaseNSJP_RS03370Not AvailableNegative685640 - 68707354358.8
deda family proteinNSJP_RS03375Not AvailableNegative687077 - 68770623232.6
5'/3'-nucleotidase sureNSJP_RS03380Not AvailableNegative687721 - 68851529066.0
Trna-proNot AvailableNot AvailablePositive688654 - 688730Not Available
merr family transcriptional regulatorNSJP_RS03390Not AvailableNegative688815 - 68915913474.6
integration host factor subunit alphaNSJP_RS03395Not AvailableNegative689200 - 68947510120.4

Displaying genes 671 – 680 of 3798 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.