Nitrospira japonica

Kingdom

Pseudomonadati

Phylum

Nitrospirota

Class

Nitrospiria

Order

Nitrospirales

Family

Nitrospiraceae

Genus

Nitrospira

Description

Nitrospira japonica is a noteworthy species within the Nitrospira genus, characterized by its single replicon structure. This trait is significant as it contributes to the organism's genetic stability and adaptability. The species is cataloged under the accession number NZ_LT828648.1, which provides a reference for researchers exploring its genetic and functional attributes. Nitrospira japonica is recognized for its role in the nitrogen cycle, specifically in the oxidation of nitrite to nitrate. This process is essential for maintaining soil and aquatic ecosystems, as it facilitates nutrient availability for various organisms. The efficient conversion of nitrite to nitrate by Nitrospira japonica underscores its importance in promoting plant growth and supporting overall ecosystem health. In summary, Nitrospira japonica, with its single replicon and documented genetic information, plays a crucial role in the nitrogen cycle. Its ability to contribute to the oxidation of nitrite highlights its ecological significance, particularly in nutrient cycling within various environments. Understanding the functions and behaviors of such microorganisms can provide insights into ecosystem management and the maintenance of environmental health.

Taxonomy

KingdomPseudomonadati
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrospira japonica isolate Genome sequencing of Nitrospira

Gene Summary

Adenine Count

840259 bp

Thymine Count

836182 bp

Guanine Count

1204330 bp

Cytosine Count

1204046 bp

Genome Length

4084817 bp

Protein-coding Genes

3741 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetratricopeptide repeat proteinNSJP_RS15390Not AvailablePositive3231775 - 323397379727.9
2-hydroxyacid dehydrogenaseNSJP_RS15395Not AvailableNegative3234130 - 323509534463.6
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolaseNSJP_RS15400Not AvailablePositive3235469 - 323702255665.2
phosphoribosylamine--glycine ligaseNSJP_RS15405Not AvailablePositive3237151 - 323843145376.9
l-threonylcarbamoyladenylate synthaseNSJP_RS15410Not AvailablePositive3238449 - 323909622559.6
hypothetical proteinNSJP_RS15415Not AvailablePositive3239144 - 323957215287.7
fmdb family zinc ribbon proteinNSJP_RS15420Not AvailableNegative3239593 - 323996412665.7
pyridoxal phosphate-dependent aminotransferaseNSJP_RS15425Not AvailableNegative3240012 - 324120542296.7
pantetheine-phosphate adenylyltransferaseNSJP_RS15430Not AvailableNegative3241202 - 324169018169.4
16s rrna (guanine(966)-n(2))-methyltransferase rsmdNSJP_RS15435Not AvailableNegative3241687 - 324222319104.8

Displaying genes 3061 – 3070 of 3798 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.