Nitrospira japonica

Kingdom

Pseudomonadati

Phylum

Nitrospirota

Class

Nitrospiria

Order

Nitrospirales

Family

Nitrospiraceae

Genus

Nitrospira

Description

Nitrospira japonica is a noteworthy species within the Nitrospira genus, characterized by its single replicon structure. This trait is significant as it contributes to the organism's genetic stability and adaptability. The species is cataloged under the accession number NZ_LT828648.1, which provides a reference for researchers exploring its genetic and functional attributes. Nitrospira japonica is recognized for its role in the nitrogen cycle, specifically in the oxidation of nitrite to nitrate. This process is essential for maintaining soil and aquatic ecosystems, as it facilitates nutrient availability for various organisms. The efficient conversion of nitrite to nitrate by Nitrospira japonica underscores its importance in promoting plant growth and supporting overall ecosystem health. In summary, Nitrospira japonica, with its single replicon and documented genetic information, plays a crucial role in the nitrogen cycle. Its ability to contribute to the oxidation of nitrite highlights its ecological significance, particularly in nutrient cycling within various environments. Understanding the functions and behaviors of such microorganisms can provide insights into ecosystem management and the maintenance of environmental health.

Taxonomy

KingdomPseudomonadati
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesNitrospira japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitrospira japonica isolate Genome sequencing of Nitrospira

Gene Summary

Adenine Count

840259 bp

Thymine Count

836182 bp

Guanine Count

1204330 bp

Cytosine Count

1204046 bp

Genome Length

4084817 bp

Protein-coding Genes

3741 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phenylalanine--trna ligase subunit alphaNSJP_RS06630Not AvailablePositive1393907 - 139546957795.6
phenylalanine--trna ligase subunit betaNSJP_RS06635Not AvailablePositive1395472 - 139718762655.8
50s ribosomal protein l20NSJP_RS06640Not AvailableNegative1397251 - 139761913637.8
50s ribosomal protein l35NSJP_RS06645Not AvailableNegative1397657 - 13978517219.98
translation initiation factor if-3NSJP_RS06650Not AvailableNegative1397889 - 139838018784.8
threonine--trna ligaseNSJP_RS06655Not AvailableNegative1398409 - 140033771913.0
Trna-valNot AvailableNot AvailablePositive1400415 - 1400489Not Available
hu family dna-binding proteinNSJP_RS06665Not AvailableNegative1400629 - 14009019486.77
helix-turn-helix domain-containing proteinNSJP_RS06670Not AvailableNegative1400982 - 140157221443.2
rrf2 family transcriptional regulatorNSJP_RS06675Not AvailablePositive1402043 - 140249216420.2

Displaying genes 1321 – 1330 of 3798 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.