Kosakonia radicincitans strain D4

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Kosakonia

Description

Kosakonia radicincitans strain D4 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_LT799040.1, providing a reference for its genetic information and potential applications in research. This bacterium is part of the Kosakonia genus, known for its role in various ecological contexts, particularly in association with plants. Members of the Kosakonia genus have been studied for their contributions to nutrient cycling and plant growth promotion, often through mechanisms like nitrogen fixation or the production of phytohormones. The presence of only one replicon in strain D4 suggests a streamlined genomic organization, which may influence its adaptability and efficiency in its ecological niches. Such a trait could be advantageous for survival in diverse environments, potentially allowing for rapid responses to environmental changes or stresses. Overall, the genomic characteristics of Kosakonia radicincitans strain D4, particularly its single replicon structure, could provide insights into its ecological roles and interactions with other organisms. Understanding these traits may enhance our comprehension of its contributions to plant health and soil microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKosakonia
SpeciesKosakonia radicincitans
Strainstrain D4

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Kosakonia radicincitans strain D4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kosakonia radicincitans strain D4 chromosome I.

Gene Summary

Adenine Count

1277395 bp

Thymine Count

1272570 bp

Guanine Count

1489598 bp

Cytosine Count

1492766 bp

Genome Length

5532429 bp

Protein-coding Genes

4977 genes

Non-Coding Genes

287 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system protein tssaB5X74_RS17665Not AvailablePositive3660644 - 366165737067.0
type vi secretion system contractile sheath small subunitB5X74_RS17670Not AvailablePositive3661732 - 366225619580.5
type vi secretion system contractile sheath large subunitB5X74_RS17675Not AvailablePositive3662260 - 366375956699.5
rap1a/tai family immunity proteinB5X74_RS26765Not AvailablePositive3663794 - 366425517433.8
t6ss effector amidase tae4 family proteinB5X74_RS17685Not AvailablePositive3664252 - 366474618826.6
hypothetical proteinB5X74_RS17690Not AvailableNegative3664753 - 36650169916.65
hcp family type vi secretion system effectorB5X74_RS17695Not AvailablePositive3665281 - 366576316849.6
putative t6ss immunity periplasmic lipoproteinB5X74_RS17700Not AvailablePositive3665919 - 366631414350.1
type vi secretion system-associated fha domain protein taghB5X74_RS17705Not AvailablePositive3666440 - 366822764759.5
pp2c family protein-serine/threonine phosphataseB5X74_RS17710Not AvailablePositive3668224 - 366901829612.5

Displaying genes 3631 – 3640 of 5264 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.