Kosakonia radicincitans strain D4

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Kosakonia

Description

Kosakonia radicincitans strain D4 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_LT799040.1, providing a reference for its genetic information and potential applications in research. This bacterium is part of the Kosakonia genus, known for its role in various ecological contexts, particularly in association with plants. Members of the Kosakonia genus have been studied for their contributions to nutrient cycling and plant growth promotion, often through mechanisms like nitrogen fixation or the production of phytohormones. The presence of only one replicon in strain D4 suggests a streamlined genomic organization, which may influence its adaptability and efficiency in its ecological niches. Such a trait could be advantageous for survival in diverse environments, potentially allowing for rapid responses to environmental changes or stresses. Overall, the genomic characteristics of Kosakonia radicincitans strain D4, particularly its single replicon structure, could provide insights into its ecological roles and interactions with other organisms. Understanding these traits may enhance our comprehension of its contributions to plant health and soil microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKosakonia
SpeciesKosakonia radicincitans
Strainstrain D4

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Kosakonia radicincitans strain D4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kosakonia radicincitans strain D4 chromosome I.

Gene Summary

Adenine Count

1277395 bp

Thymine Count

1272570 bp

Guanine Count

1489598 bp

Cytosine Count

1492766 bp

Genome Length

5532429 bp

Protein-coding Genes

4977 genes

Non-Coding Genes

287 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pseudaminic acid cytidylyltransferaseB5X74_RS16030Not AvailablePositive3329249 - 332995927015.2
udp-2,4-diacetamido-2,4, 6-trideoxy-beta-l-altropyranose hydrolaseB5X74_RS16035Not AvailablePositive3329937 - 333104941533.3
udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine n-acetyltransferaseB5X74_RS16040Not AvailablePositive3331052 - 333164523208.9
pseudaminic acid synthaseB5X74_RS16045Not AvailablePositive3331677 - 333272338287.6
oligosaccharide flippase family proteinB5X74_RS16050Not AvailablePositive3332737 - 333394245945.6
glycosyltransferase family 52B5X74_RS16055Not AvailablePositive3333939 - 333488936177.6
duf6418 domain-containing proteinB5X74_RS16060Not AvailablePositive3334915 - 333623750492.8
glycosyltransferase family 2 proteinB5X74_RS16065Not AvailablePositive3336215 - 333719237346.2
duf4422 domain-containing proteinB5X74_RS16070Not AvailablePositive3337192 - 333796229945.8
udp-galactopyranose mutaseB5X74_RS16075Not AvailablePositive3337959 - 333910444485.8

Displaying genes 3301 – 3310 of 5264 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.