Kosakonia radicincitans strain D4

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Kosakonia

Description

Kosakonia radicincitans strain D4 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_LT799040.1, providing a reference for its genetic information and potential applications in research. This bacterium is part of the Kosakonia genus, known for its role in various ecological contexts, particularly in association with plants. Members of the Kosakonia genus have been studied for their contributions to nutrient cycling and plant growth promotion, often through mechanisms like nitrogen fixation or the production of phytohormones. The presence of only one replicon in strain D4 suggests a streamlined genomic organization, which may influence its adaptability and efficiency in its ecological niches. Such a trait could be advantageous for survival in diverse environments, potentially allowing for rapid responses to environmental changes or stresses. Overall, the genomic characteristics of Kosakonia radicincitans strain D4, particularly its single replicon structure, could provide insights into its ecological roles and interactions with other organisms. Understanding these traits may enhance our comprehension of its contributions to plant health and soil microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKosakonia
SpeciesKosakonia radicincitans
Strainstrain D4

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Kosakonia radicincitans strain D4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kosakonia radicincitans strain D4 chromosome I.

Gene Summary

Adenine Count

1277395 bp

Thymine Count

1272570 bp

Guanine Count

1489598 bp

Cytosine Count

1492766 bp

Genome Length

5532429 bp

Protein-coding Genes

4977 genes

Non-Coding Genes

287 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorB5X74_RS12175Not AvailableNegative2513056 - 251397034501.4
nitrous oxide-stimulated promoter family proteinB5X74_RS12180Not AvailablePositive2514185 - 251452613395.6
molybdopterin-binding proteinB5X74_RS12185Not AvailableNegative2514635 - 251506314486.3
formate hydrogenlyase transcriptional activator flhaB5X74_RS12190Not AvailableNegative2515106 - 251718177785.9
hydrogenase expression/formation protein hypeB5X74_RS12195Not AvailableNegative2517238 - 251824834983.3
hydrogenase formation protein hypdB5X74_RS12200Not AvailableNegative2518245 - 251936641224.6
hypc/hybg/hupf family hydrogenase formation chaperoneB5X74_RS12205Not AvailableNegative2519366 - 25196389646.62
hydrogenase nickel incorporation protein hypbB5X74_RS12210Not AvailableNegative2519629 - 252050131600.7
hydrogenase maturation nickel metallochaperone hypaB5X74_RS12215Not AvailableNegative2520505 - 252085213063.7
formate hydrogenlyase regulator hycaB5X74_RS12220Not AvailablePositive2521051 - 252151817054.2

Displaying genes 2581 – 2590 of 5264 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.