Kosakonia radicincitans strain D4

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Kosakonia

Description

Kosakonia radicincitans strain D4 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_LT799040.1, providing a reference for its genetic information and potential applications in research. This bacterium is part of the Kosakonia genus, known for its role in various ecological contexts, particularly in association with plants. Members of the Kosakonia genus have been studied for their contributions to nutrient cycling and plant growth promotion, often through mechanisms like nitrogen fixation or the production of phytohormones. The presence of only one replicon in strain D4 suggests a streamlined genomic organization, which may influence its adaptability and efficiency in its ecological niches. Such a trait could be advantageous for survival in diverse environments, potentially allowing for rapid responses to environmental changes or stresses. Overall, the genomic characteristics of Kosakonia radicincitans strain D4, particularly its single replicon structure, could provide insights into its ecological roles and interactions with other organisms. Understanding these traits may enhance our comprehension of its contributions to plant health and soil microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKosakonia
SpeciesKosakonia radicincitans
Strainstrain D4

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Kosakonia radicincitans strain D4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kosakonia radicincitans strain D4 chromosome I.

Gene Summary

Adenine Count

1277395 bp

Thymine Count

1272570 bp

Guanine Count

1489598 bp

Cytosine Count

1492766 bp

Genome Length

5532429 bp

Protein-coding Genes

4977 genes

Non-Coding Genes

287 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
6-phospho-beta-glucosidaseB5X74_RS12075Not AvailableNegative2486268 - 248762350410.3
transcriptional regulator chbrB5X74_RS12080Not AvailableNegative2487683 - 248852232784.2
pts n,n'-diacetylchitobiose transporter subunit iicB5X74_RS12085Not AvailableNegative2488599 - 248995748408.2
pts sugar transporter subunit iibB5X74_RS12090Not AvailableNegative2490031 - 249035411485.2
porinB5X74_RS12095Not AvailableNegative2490645 - 249179043441.4
nad(p)h-dependent oxidoreductaseB5X74_RS12100Not AvailableNegative2492258 - 249284521092.1
tetr/acrr family transcriptional regulatorB5X74_RS12105Not AvailablePositive2492959 - 249354621442.0
nitrate regulatory proteinB5X74_RS12110Not AvailablePositive2493611 - 249487347375.9
cmpa/nrta family abc transporter substrate-binding proteinB5X74_RS12115Not AvailablePositive2495157 - 249641345376.2
nitrate abc transporter permeaseB5X74_RS12120Not AvailablePositive2496424 - 249730832442.8

Displaying genes 2561 – 2570 of 5264 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.