Pseudomonas vancouverensis strain LMG 20222

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas vancouverensis strain LMG 20222, characterized by a single replicon, is cataloged under the accession number NZ_LT629803.1. This strain belongs to the Pseudomonas genus, which is known for its metabolic diversity and ecological versatility. Pseudomonas species are often associated with various environments, including soil and water, and can play significant roles in nutrient cycling and bioremediation. The presence of a single replicon in Pseudomonas vancouverensis LMG 20222 is notable, as it may influence the genetic stability and adaptability of the strain. This trait can affect how the organism responds to environmental stresses and its potential for horizontal gene transfer, which is a common feature in Pseudomonas species, facilitating the acquisition of new metabolic capabilities. Understanding the genetic framework of Pseudomonas vancouverensis LMG 20222 through its accession data can provide insights into the mechanisms that allow this strain to thrive in diverse ecological niches. The ecological implications of this strain could be significant, particularly in its potential application for bioremediation efforts, where the ability to degrade pollutants or contribute to nutrient cycling could be harnessed. Overall, Pseudomonas vancouverensis strain LMG 20222 exemplifies the adaptive traits of its genus, highlighting its ecological importance and potential utility in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas vancouverensis
Strainstrain LMG 20222

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas vancouverensis strain LMG 20222
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas vancouverensis strain LMG 20222 chromosome I.

Gene Summary

Adenine Count

1280531 bp

Thymine Count

1282577 bp

Guanine Count

1935422 bp

Cytosine Count

1926275 bp

Genome Length

6424905 bp

Protein-coding Genes

5714 genes

Non-Coding Genes

222 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhs repeat-associated core domain-containing proteinBLV08_RS27445Not AvailablePositive5966105 - 596692628472.8
retropepsin-like aspartic proteaseBLV08_RS27450Not AvailablePositive5967016 - 596824845107.6
glycine-betaine demethylase subunit gbcaBLV08_RS27455Not AvailableNegative5969005 - 597030048977.6
glycine-betaine demethylase subunit gbcbBLV08_RS27465Not AvailablePositive5970585 - 597168540555.6
sdr family oxidoreductaseBLV08_RS27470Not AvailableNegative5971815 - 597263929921.0
low specificity l-threonine aldolaseBLV08_RS27475Not AvailableNegative5972843 - 597388338218.1
trax family proteinBLV08_RS27480Not AvailablePositive5974038 - 597475426923.0
serine hydroxymethyltransferaseBLV08_RS27485Not AvailablePositive5975004 - 597625744643.2
sarcosine oxidase subunit betaBLV08_RS27490Not AvailablePositive5976281 - 597753145272.0
sarcosine oxidase subunit deltaBLV08_RS27495Not AvailablePositive5977547 - 597787612584.6

Displaying genes 5501 – 5510 of 5936 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.