Pseudomonas vancouverensis strain LMG 20222

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas vancouverensis strain LMG 20222, characterized by a single replicon, is cataloged under the accession number NZ_LT629803.1. This strain belongs to the Pseudomonas genus, which is known for its metabolic diversity and ecological versatility. Pseudomonas species are often associated with various environments, including soil and water, and can play significant roles in nutrient cycling and bioremediation. The presence of a single replicon in Pseudomonas vancouverensis LMG 20222 is notable, as it may influence the genetic stability and adaptability of the strain. This trait can affect how the organism responds to environmental stresses and its potential for horizontal gene transfer, which is a common feature in Pseudomonas species, facilitating the acquisition of new metabolic capabilities. Understanding the genetic framework of Pseudomonas vancouverensis LMG 20222 through its accession data can provide insights into the mechanisms that allow this strain to thrive in diverse ecological niches. The ecological implications of this strain could be significant, particularly in its potential application for bioremediation efforts, where the ability to degrade pollutants or contribute to nutrient cycling could be harnessed. Overall, Pseudomonas vancouverensis strain LMG 20222 exemplifies the adaptive traits of its genus, highlighting its ecological importance and potential utility in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas vancouverensis
Strainstrain LMG 20222

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas vancouverensis strain LMG 20222
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas vancouverensis strain LMG 20222 chromosome I.

Gene Summary

Adenine Count

1280531 bp

Thymine Count

1282577 bp

Guanine Count

1935422 bp

Cytosine Count

1926275 bp

Genome Length

6424905 bp

Protein-coding Genes

5714 genes

Non-Coding Genes

222 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system hica family toxinBLV08_RS18850Not AvailablePositive4110319 - 41104836105.66
type ii toxin-antitoxin system hicb family antitoxinBLV08_RS18855Not AvailablePositive4110520 - 411092714691.5
class i sam-dependent methyltransferaseBLV08_RS18860Not AvailablePositive4110987 - 411171526975.4
trans-aconitate 2-methyltransferaseBLV08_RS18865Not AvailableNegative4111781 - 411255127973.3
low affinity iron permease family proteinBLV08_RS18870Not AvailablePositive4112722 - 411312615229.7
duf4142 domain-containing proteinBLV08_RS18875Not AvailableNegative4113181 - 411368418346.9
kgg domain-containing proteinBLV08_RS18880Not AvailableNegative4113759 - 41139145465.33
sensor domain-containing diguanylate cyclaseBLV08_RS18885Not AvailableNegative4114033 - 411537950044.0
lyse family translocatorBLV08_RS18890Not AvailableNegative4115459 - 411609722366.9
lysr substrate-binding domain-containing proteinBLV08_RS18895Not AvailableNegative4116182 - 411709633572.7

Displaying genes 3781 – 3790 of 5936 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.