Stappia sp. ES.058

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Stappiaceae

Genus

Stappia

Description

Stappia sp. ES.058 is a Gram-negative rod-shaped bacterium characterized by a single replicon. This organism is classified under the genus Stappia, which is known to encompass various species of environmental significance. The specific accession number for Stappia sp. ES.058 is NZ_LT629784.1, which provides a reference for genomic information. The Gram-negative nature of Stappia sp. ES.058 indicates that it possesses an outer membrane containing lipopolysaccharides, which can influence its interactions with the environment, including its susceptibility to antibiotics and its role in ecological processes. The rod shape is a common morphology among bacteria that can contribute to motility and colonization capabilities in various habitats. Stappia species are often associated with diverse environments, including marine systems, where they may play roles in nutrient cycling and the degradation of organic matter. The presence of a single replicon suggests a streamlined genomic organization, which can be advantageous for survival in fluctuating environmental conditions. In summary, Stappia sp. ES.058 exemplifies the characteristics of Gram-negative, rod-shaped bacteria with ecological roles that may involve interactions with organic materials in its habitat. Understanding such traits is crucial for elucidating the potential contributions of this bacterium to its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusStappia
SpeciesStappia sp. ES.058
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stappia sp. ES.058 chromosome I.

Gene Summary

Adenine Count

843811 bp

Thymine Count

839857 bp

Guanine Count

1468009 bp

Cytosine Count

1474477 bp

Genome Length

4626254 bp

Protein-coding Genes

4221 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
choline dehydrogenaseBLU32_RS02775Not AvailableNegative586362 - 58801760185.9
transcriptional regulator betiBLU32_RS02780Not AvailableNegative588021 - 58859921173.7
choline abc transporter substrate-binding proteinBLU32_RS02785Not AvailablePositive588916 - 58986333606.6
choline abc transporter permease subunitBLU32_RS02790Not AvailablePositive590036 - 59088130428.1
choline abc transporter atp-binding proteinBLU32_RS02795Not AvailablePositive590878 - 59190636955.8
mate family efflux transporterBLU32_RS02800Not AvailableNegative591916 - 59325647305.6
marr family winged helix-turn-helix transcriptional regulatorBLU32_RS02805Not AvailablePositive593548 - 59398215259.4
nyn domain-containing proteinBLU32_RS02810Not AvailableNegative594063 - 59468323603.0
histone deacetylaseBLU32_RS02815Not AvailablePositive594969 - 59587132022.4
duf6460 domain-containing proteinBLU32_RS02820Not AvailableNegative595884 - 59615910161.8

Displaying genes 661 – 670 of 4354 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.