Stappia sp. ES.058

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Stappiaceae

Genus

Stappia

Description

Stappia sp. ES.058 is a Gram-negative rod-shaped bacterium characterized by a single replicon. This organism is classified under the genus Stappia, which is known to encompass various species of environmental significance. The specific accession number for Stappia sp. ES.058 is NZ_LT629784.1, which provides a reference for genomic information. The Gram-negative nature of Stappia sp. ES.058 indicates that it possesses an outer membrane containing lipopolysaccharides, which can influence its interactions with the environment, including its susceptibility to antibiotics and its role in ecological processes. The rod shape is a common morphology among bacteria that can contribute to motility and colonization capabilities in various habitats. Stappia species are often associated with diverse environments, including marine systems, where they may play roles in nutrient cycling and the degradation of organic matter. The presence of a single replicon suggests a streamlined genomic organization, which can be advantageous for survival in fluctuating environmental conditions. In summary, Stappia sp. ES.058 exemplifies the characteristics of Gram-negative, rod-shaped bacteria with ecological roles that may involve interactions with organic materials in its habitat. Understanding such traits is crucial for elucidating the potential contributions of this bacterium to its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusStappia
SpeciesStappia sp. ES.058
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stappia sp. ES.058 chromosome I.

Gene Summary

Adenine Count

843811 bp

Thymine Count

839857 bp

Guanine Count

1468009 bp

Cytosine Count

1474477 bp

Genome Length

4626254 bp

Protein-coding Genes

4221 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal-phosphate dependent enzymeBLU32_RS10365Not AvailableNegative2252169 - 225323936393.7
fpg/nei family dna glycosylaseBLU32_RS10370Not AvailableNegative2253517 - 225431429871.8
2og-fe dioxygenase family proteinBLU32_RS10375Not AvailablePositive2254541 - 225526327469.2
diaminopimelate decarboxylase family proteinBLU32_RS10380Not AvailablePositive2255283 - 225663248888.3
hypothetical proteinBLU32_RS21790Not AvailablePositive2256607 - 225741330683.3
hypothetical proteinBLU32_RS10390Not AvailablePositive2257410 - 225863343900.6
lyse family translocatorBLU32_RS10395Not AvailablePositive2258634 - 225928723033.7
trap transporter large permeaseBLU32_RS10400Not AvailableNegative2259304 - 226062645898.0
trap transporter small permease subunitBLU32_RS10405Not AvailableNegative2260628 - 226115518551.3
c4-dicarboxylate trap transporter substrate-binding proteinBLU32_RS10410Not AvailableNegative2261219 - 226229238844.7

Displaying genes 2121 – 2130 of 4354 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.