Pseudomonas koreensis strain LMG 21318

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain LMG 21318 is a Gram-negative bacterium that has been isolated from Korean agricultural soil, specifically within the rice rhizosphere. This strain possesses a single replicon, which is characteristic of its genomic structure. One notable aspect of Pseudomonas koreensis is its association with Homo sapiens, as it has been implicated in cases of infectious keratitis. This health effect indicates that the bacterium can act as a pathogen in humans, highlighting its potential medical significance. The ecological role of Pseudomonas koreensis within its native habitat is likely linked to its interactions within the rice rhizosphere, where it may play a role in nutrient cycling or plant health. The presence of this strain in agricultural soil underscores the complex relationships between soil microbiota and crop ecosystems, suggesting that Pseudomonas koreensis could be a factor in plant growth or soil health management. The strain is cataloged under the accession number NZ_LT629687.1, allowing for further research into its genetic and phenotypic characteristics. Overall, Pseudomonas koreensis strain LMG 21318 exemplifies the dual nature of some soil bacteria, serving both beneficial roles in agriculture and posing risks to human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain LMG 21318

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain LMG 21318
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain LMG 21318 chromosome I.

Gene Summary

Adenine Count

1203591 bp

Thymine Count

1213312 bp

Guanine Count

1856564 bp

Cytosine Count

1850346 bp

Genome Length

6123913 bp

Protein-coding Genes

5313 genes

Non-Coding Genes

296 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alanyl-trna editing proteinBLS19_RS02725Not AvailablePositive636942 - 63767026693.3
abc transporter permeaseBLS19_RS02730Not AvailablePositive637949 - 63969464848.9
aaa-associated domain-containing proteinBLS19_RS02735Not AvailablePositive639709 - 64103148538.5
2-methylcitrate dehydrataseBLS19_RS02740Not AvailableNegative641056 - 64254054749.6
2-methylaconitate cis-trans isomerase prpfBLS19_RS02745Not AvailableNegative642715 - 64390541405.6
fe/s-dependent 2-methylisocitrate dehydratase acndBLS19_RS02750Not AvailableNegative643960 - 64655494475.0
2-methylcitrate synthaseBLS19_RS02755Not AvailableNegative646753 - 64788041887.2
methylisocitrate lyaseBLS19_RS02760Not AvailableNegative648013 - 64890332029.4
gntr family transcriptional regulatorBLS19_RS02765Not AvailableNegative648900 - 64962227253.4
atp-dependent zinc proteaseBLS19_RS02770Not AvailablePositive650028 - 65056419549.6

Displaying genes 821 – 830 of 5609 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total