Pseudomonas koreensis strain LMG 21318

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain LMG 21318 is a Gram-negative bacterium that has been isolated from Korean agricultural soil, specifically within the rice rhizosphere. This strain possesses a single replicon, which is characteristic of its genomic structure. One notable aspect of Pseudomonas koreensis is its association with Homo sapiens, as it has been implicated in cases of infectious keratitis. This health effect indicates that the bacterium can act as a pathogen in humans, highlighting its potential medical significance. The ecological role of Pseudomonas koreensis within its native habitat is likely linked to its interactions within the rice rhizosphere, where it may play a role in nutrient cycling or plant health. The presence of this strain in agricultural soil underscores the complex relationships between soil microbiota and crop ecosystems, suggesting that Pseudomonas koreensis could be a factor in plant growth or soil health management. The strain is cataloged under the accession number NZ_LT629687.1, allowing for further research into its genetic and phenotypic characteristics. Overall, Pseudomonas koreensis strain LMG 21318 exemplifies the dual nature of some soil bacteria, serving both beneficial roles in agriculture and posing risks to human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain LMG 21318

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain LMG 21318
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain LMG 21318 chromosome I.

Gene Summary

Adenine Count

1203591 bp

Thymine Count

1213312 bp

Guanine Count

1856564 bp

Cytosine Count

1850346 bp

Genome Length

6123913 bp

Protein-coding Genes

5313 genes

Non-Coding Genes

296 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2934 domain-containing proteinBLS19_RS27140Not AvailablePositive5885959 - 588629111642.8
glycogen debranching protein glgxBLS19_RS27145Not AvailablePositive5886584 - 588874381667.8
acyl-coa dehydrogenase family proteinBLS19_RS27150Not AvailablePositive5888745 - 588974335767.3
pig-l deacetylase family proteinBLS19_RS27155Not AvailablePositive5889740 - 589051328007.4
sam-dependent methyltransferaseBLS19_RS27160Not AvailablePositive5890510 - 589110922786.9
glycosyltransferaseBLS19_RS27165Not AvailablePositive5891106 - 589179224842.3
pig-l deacetylase family proteinBLS19_RS27170Not AvailablePositive5891950 - 589270827999.5
duf6124 family proteinBLS19_RS27175Not AvailableNegative5892902 - 589326112652.0
duf6124 family proteinBLS19_RS27180Not AvailableNegative5893401 - 589377513710.6
endonuclease/exonuclease/phosphatase family proteinBLS19_RS27185Not AvailablePositive5894240 - 589502229917.6

Displaying genes 5421 – 5430 of 5609 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total